| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 232553 = | 55 (1.060) | 6 (0.130) | 6/258 | 5.8 | 10.0% | intergenic (+4/+44) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913 | 232584 = | 58 (1.220) | intergenic (+35/+13) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCAGAAGCGTTAGTAGACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAGCGCATCACATCTTTGAT > NC_000913/232413‑232695 | cGCAAGAAGAGTTAGTAGACGCTATTCACAGTTACCAACAGAAATCTAAAACATAAATGAAAACATATATTGCAATGCAGAATGATGGCTTATTAACAAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATaaaa < 2:625235/143‑1 (MQ=255) aGAAGCGTTAGTAGACGCTATTCGCATTTACCAACAGAGAGCATCGACCGCGGTGCGAACGTATCTTGCCTTGCAGAATGATGGCTTTTTCAACAGTGATATCATCAGGCTAGATGCACATAAAGCGGCA‑TAAATAAAAAAgg < 2:385436/143‑1 (MQ=255) gCGTTAGTAGACGCTATTCGCATTTACCAAGAGAACTCATCGTCAGTGCTGAAAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCAcc < 2:625464/143‑1 (MQ=255) gCGTTAGTAGACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATCGAGCGGCA‑TCAATAAAAGAGGCAcc > 1:920573/1‑143 (MQ=255) cGTTAGTAGACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGCTGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TCAATAAAAAAGGCACCg > 2:164455/1‑143 (MQ=255) tagtagACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGGCCCgggg > 1:160363/1‑143 (MQ=255) gtagACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCCCATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGa < 1:859537/143‑1 (MQ=255) gtagACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGa > 1:238330/1‑143 (MQ=255) aCGCTATTCGTATTTACCAACAGAGCGCATCGATAGAGGTGATAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCg < 1:379235/143‑1 (MQ=255) tttACCCACAGATCCCATCGACAGAGGTGAGAACGTATCTTGCCTTGCAGCATGATGGCTTTTTCACCAGTGCTCTCATCATGGTAGATGCACATAAAGCGGCA‑TAACTAAAAAAGGCACCGGGGGAATCGGTGCCTTTttat < 1:139541/143‑1 (MQ=255) cAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TCAATAAAAAAGGCACCGGGGGAATAGGTGGCTTGTTATTATCt > 2:139270/1‑143 (MQ=255) cAACAGAGCGCATCGACAGAGGCGAGAACCAATCGCCCCTAGCGTTCTGATGGCAGTTTCACCAGTCATATCAGCATGGTAGAGGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTCTCATTATCt > 2:634617/1‑143 (MQ=255) aaCAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTGTTATTctctc > 2:304211/1‑142 (MQ=255) tagagCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGt < 2:353512/142‑1 (MQ=255) agagCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTtattatgcggct > 2:623491/1‑137 (MQ=255) gagCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACAGGGGGAATCGGTGCCTTTTTATTATCTGGttt > 2:894127/1‑143 (MQ=255) gagCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTGCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGttt < 1:35525/143‑1 (MQ=255) acccGACATAGTGGAGAACTCAGTTTGCCTGGCAGAATGTGGGCGCTCTGACCAGTGATATCATCATGGTAGATGCACATAAATCGGCA‑TGAATAAAAAAGGCACCGGGGGAAACGGTGCCTTTTTATTATCTGGTTTGTCAg < 2:404857/140‑1 (MQ=255) aTCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTAACTGGTTACTCAgg > 2:661754/1‑143 (MQ=255) gACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGGTTGTCAGGAAt > 2:797632/1‑143 (MQ=255) ttGAGAACGTATTTTGCCTGGTAGAATTATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAt < 2:790608/142‑1 (MQ=255) gagaACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgt > 2:525479/1‑143 (MQ=255) aCGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACCTAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATGATCTGGTTTGTCAAGAATATGGCAtgttgtt > 1:896985/1‑143 (MQ=255) aCGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATATTGCGGCA‑TATATAAAAACGGCACCGGGGGAATCGGAACCTTTTTATAATCTGGTATGTCAGGAATCTGGCAtgttgtt > 1:28217/1‑143 (MQ=255) gTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgttgttgt > 1:588649/1‑143 (MQ=255) gTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATAGGATTTGTCAGGAATCTGGCAtgttattga > 1:818642/1‑142 (MQ=255) aTTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttt > 1:858296/1‑143 (MQ=255) ttttGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGTCA‑TAAATAAAATAGGCTCCTGGTTAATCGGTGCCTTTTTATTATTTGGTTTGTTAGAAATCTGACATGTTGTTGtttt > 1:423516/1‑143 (MQ=255) ttttGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGCATCGGTGCCTTGTCATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGtttt > 1:257600/1‑143 (MQ=255) tGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTca < 1:57144/143‑1 (MQ=255) cTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCTGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGGTGTTTTTCacaa > 1:577167/1‑143 (MQ=255) aagtatgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGt < 2:331644/139‑1 (MQ=255) atgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAAT‑AAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGCAATCTGGCATGTTGTTGGTTTTCACAAACAACGTCAGCt > 1:129824/1‑143 (MQ=255) gCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCC‑TAAATAAAAAAGGCACCGGGAGAATCAGAGCGTTGTGTTGGTATGGTTTTTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAAAGTCAGCTTa > 2:236355/1‑143 (MQ=255) gCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTa > 2:85758/1‑143 (MQ=255) ttttCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCg > 2:794822/1‑143 (MQ=255) gtccACCAGTGATATCATCACGGTAGACGCACATAAAGCGGCA‑TAAATAAAAAAGGCCCCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGc < 2:675178/140‑1 (MQ=255) cagcAGTTATATCATCATGGTTGTTGCATATAATGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGTAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTg < 2:316867/140‑1 (MQ=255) aCCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCCCAAACAACGCCAGCTTATCGCCTgg > 1:281156/1‑143 (MQ=255) ccAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGt < 2:758174/143‑1 (MQ=255) cAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAACTAAACATGGAACCCGGGTGGGCGCACCACTCCTGGGTTTGGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTGTCGGCGGGtt > 1:700941/1‑143 (MQ=255) tGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGCTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCa < 1:618597/143‑1 (MQ=255) tatCATCATGGTAGATGCCCATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCGTGGTTGCAGAt > 1:640994/1‑143 (MQ=255) tcaccaTGGTAGATGCACATAAAGCGGCA‑TAAATTAAAAATGCACCGGGGGAATCGTTGCCTTTTTATTATCTGGTTTGTCAGCAATCTGGCATGTTGTTGTTTTTCACAAACAATGTCAGCTTATCGCCTGGTTGCAGATTc < 2:67765/143‑1 (MQ=255) atcatGGTAGATGCACATAAAGCGGCA‑TAAATAACAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGc < 2:161363/143‑1 (MQ=255) atcatGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGACAGCTTATCGCCTGGTTGCAGATTCGc < 2:117192/143‑1 (MQ=255) tcatGGTAGGTGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCa < 2:437274/143‑1 (MQ=255) tGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAgtg > 1:5627/1‑143 (MQ=255) acaTAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCTTCTGGTTGCAGAGTCACACTGCCGCGGTTcc > 2:672019/1‑143 (MQ=255) aTAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTAGTTGCAGATTCGCAGTGTCGCTGTTCCAg > 2:119481/1‑143 (MQ=255) ttaaGCGGCATTAAAAAAAAATGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAg < 2:160363/141‑1 (MQ=255) aGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCTGATTCGCGGTGTCGCTGTTCCAGCGCa > 1:483726/1‑143 (MQ=255) gCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCCGCGCATcac > 1:266146/1‑143 (MQ=255) a‑taaataaAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAGCGCACCTCAt > 2:657507/1‑143 (MQ=255) taaataaaAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCCGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAGCGCATCACATc > 1:216648/1‑143 (MQ=255) aaaaaGGCACCGGGGGTATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCTCTGTTCCAGCGCATCACATCTTTGAt < 2:281156/143‑1 (MQ=255) aaaaaGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAGCGCATCACATCTTTGAt > 1:746883/1‑143 (MQ=255) | CGCCAGAAGCGTTAGTAGACGCTATTCGCATTTACCAACAGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCA‑TAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCCTGGTTGCAGATTCGCAGTGTCGCTGTTCCAGCGCATCACATCTTTGAT > NC_000913/232413‑232695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |