New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2780852	59 (1.140)	3 (0.060)	3/266	7.7	4.8%	coding (1875/4581 nt)	ypjA	adhesin‑like autotransporter
	?	NC_000913	= 2780886	64 (1.310)					coding (1841/4581 nt)	ypjA	adhesin‑like autotransporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGCGTGCCACCATTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGTTTTCCAGCA  >  NC_000913/2780710‑2780994                                                                                                                                               |                                                                                                                                                tttGCGTGCCACCATTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTg                                                                                                                                                 <  2:77656/143‑1 (MQ=255)         ccaccaTTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCatatat                                                                                                                                         >  1:829430/1‑143 (MQ=255)            ccaTTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGt                                                                                                                                      >  2:487411/1‑143 (MQ=255)              aTTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGttt                                                                                                                                    >  2:433777/1‑143 (MQ=255)                tGATGTGTGTTTTCGCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTgg                                                                                                                                  <  2:484400/143‑1 (MQ=255)                       tgtTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAg                                                                                                                           >  1:871096/1‑143 (MQ=255)                        gtTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGc                                                                                                                          >  1:337681/1‑143 (MQ=255)                           ttCTCTGTTGACCCACCATCCACAATATGTTCACCACTTTCGAAATCTGCTTTAGTGGCTAAACGATATACTGTCTGCTTGCCACTCTAGATATTTGCTTTAACAGAAGTGCCACACGCATATGTTGTTTCGGTGCTATCACt                                                                                                                       >  2:580074/1‑143 (MQ=255)                              tctGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTAtt                                                                                                                    >  1:749217/1‑143 (MQ=255)                              tctGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTAtt                                                                                                                    <  1:34729/143‑1 (MQ=255)                                      cccACCATCAACAATTTGTTCACCACTTTCGATCTTTGCTTCAGTGGCTAAACCATATACCGTTTACTTGCCACCTTTAAAATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTTAGTACA‑g                                                                                                           >  1:55491/1‑143 (MQ=255)                                            aTCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGCGTACA‑GTGCCaa                                                                                                     >  2:894204/1‑143 (MQ=255)                                                   aTTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCttt                                                                                              <  1:487411/143‑1 (MQ=255)                                                   aTTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTATTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCttt                                                                                              <  1:287030/143‑1 (MQ=255)                                                     ttGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTc                                                                                            <  1:274566/143‑1 (MQ=255)                                                     ttGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTc                                                                                            >  1:2370/1‑143 (MQ=255)                                                      tcttCACAATTTGCGGTATCTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTcc                                                                                           <  2:764839/141‑1 (MQ=255)                                                         tCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTTTCCGATGTGATCATGTACCAACAGAATTAGGTGTCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATa                                                                                        >  1:217758/1‑143 (MQ=255)                                                          caccacTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGGACTAGTGAGTAAA‑GTGCCAAGATTTTTTCCATaa                                                                                       >  2:433281/1‑143 (MQ=255)                                                          caccacTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATaa                                                                                       <  2:174733/143‑1 (MQ=255)                                                          caccacTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATaa                                                                                       >  1:267821/1‑143 (MQ=255)                                                           accacTTTCGATATTTGCTTCAGTGGCTAAACCATCTACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATaaa                                                                                      >  1:776304/1‑143 (MQ=255)                                                             cacTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACa                                                                                    <  1:763815/143‑1 (MQ=255)                                                                tttCTATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTCCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGTGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATcc                                                                                 <  2:699622/143‑1 (MQ=255)                                                                   ctatatTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCAtt                                                                              <  2:165856/141‑1 (MQ=255)                                                                     atatTTGCTTCAGTTGTTAATGTATATACCGTTTGCTTGCCTCCCTATATATTTGATTTATCAGGAGTGGAACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCAtttt                                                                            <  1:80045/143‑1 (MQ=255)                                                                        ttcgCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGcc                                                                         <  1:438102/140‑1 (MQ=255)                                                                               cAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                                  <  1:572295/143‑1 (MQ=255)                                                                               cAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                                  <  1:581109/143‑1 (MQ=255)                                                                               cAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                                  <  2:778605/143‑1 (MQ=255)                                                                               cAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                                  <  1:760657/143‑1 (MQ=255)                                                                                attGGCTAACCTACATACCGTTTGCTTGCCACCTGTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAt                                                                 <  2:631715/141‑1 (MQ=255)                                                                                aGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTCTCCATAAACATCCATTTTGCCCTTGCCAt                                                                 >  1:886971/1‑143 (MQ=255)                                                                                  tGGCTAAACCATGTGCCGTTTGCTTCCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                               <  2:258856/143‑1 (MQ=255)                                                                                        aaCCGTATACCGTTTGCTTGCCACGTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCCTTAATATTc                                                         <  2:917203/143‑1 (MQ=255)                                                                                        aaCCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATc                                                         >  2:33605/1‑143 (MQ=255)                                                                                          ccATCTACCGTTTGCTTGCCACCTTTGATATGTGCTTTCTCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                                       <  1:402861/143‑1 (MQ=255)                                                                                           cATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTACCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCCTTAATAATCgtg                                                      >  2:517912/1‑143 (MQ=255)                                                                                                aCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAAc                                                 >  1:296827/1‑143 (MQ=255)                                                                                                   gTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCTATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                                              >  2:675235/1‑143 (MQ=255)                                                                                                      tgcttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGcgcg                                           <  2:330307/143‑1 (MQ=255)                                                                                                           gcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATACTCGTGTCAACTACGCGGGAAc                                      >  2:669802/1‑143 (MQ=255)                                                                                                                 tttGATATTTGCTTTATCAGAAGTGGCACTGGCAAATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTga                                >  1:96160/1‑143 (MQ=255)                                                                                                                    gATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATCAATAATCGTGTCAACTGCGCGGGAACAAGTgacca                             >  2:397698/1‑141 (MQ=255)                                                                                                                        tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGt                         >  1:107356/1‑143 (MQ=255)                                                                                                                           gCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATACTCGTGTCAACTGCGCGGGCGCCAGTGACGACTGtcac                      >  1:113300/1‑140 (MQ=255)                                                                                                                             tttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCCACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGCACCAGTGACGACTGGTAATg                    >  1:231367/1‑143 (MQ=255)                                                                                                                              ttattaGAAGAGGCAGTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa                   <  1:184426/143‑1 (MQ=255)                                                                                                                              ttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa                   <  2:334171/143‑1 (MQ=255)                                                                                                                              ttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa                   <  2:2370/143‑1 (MQ=255)                                                                                                                              ttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTGTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa                   >  2:142673/1‑143 (MQ=255)                                                                                                                                 tCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAACCATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGCGTGTTAATGAccc                >  1:776521/1‑143 (MQ=255)                                                                                                                                 tCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGcc                >  2:97327/1‑143 (MQ=255)                                                                                                                                        tGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTACCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAGTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCATCGttt         >  2:786882/1‑143 (MQ=255)                                                                                                                                        tGGCACTGGCATATATTGTTTGCGTGCCAGCACTATTCAGTACA‑GTGCCAACATCTTTTCCATAATCGTTATTTGGGTCAACCTCATTTGTTATTGTGTCCACTGCGTTGGAACCAGTGACGATTGTTAATGAGCCAGCGttt         <  2:425475/143‑1 (MQ=255)                                                                                                                                         ggCACTGGCATATATTGCTCGGGTGCCAGCA‑AACTCGCAACACCTTCCAAGATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGtttt        <  1:944538/143‑1 (MQ=255)                                                                                                                                            ccTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATACACATCCCTCTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGTTTTCCa     <  2:776304/142‑1 (MQ=255)                                                                                                                                            aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGCGCCAGTGACGACTGTTGATGGGCCAGCGTTTTccg     >  1:903668/1‑142 (MQ=255)                                                                                                                                            aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCAGTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGTTTTCCa     <  2:724458/143‑1 (MQ=255)                                                                                                                                               ggCATATATTGTTTGGGTGCCAGCACTATTGAGTAGA‑GTGCCATCATCTTTTCCGTAAACATCCAGTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGTTTTCCAGCa  <  2:801355/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                TTTGCGTGCCACCATTGATGTGTGTTTTCTCTGTTGACCCACCATCAACAATTTGTTCACCACTTTCGATATTTGCTTCAGTGGCTAAACCATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACA‑GTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGCCAGCGTTTTCCAGCA  >  NC_000913/2780710‑2780994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.