Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 32 [0] [0] 33 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)29 (0.600) 25/262 1.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT  >  NC_000913/3815717‑3815997
                                                                                                                                             |                                                                                                                                           
aaacctGCGTGCTAAGCGCAAATTCAATAATCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                            <  2:167364‑M1/141‑2 (MQ=255)
    cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                        >  2:928633‑M1/1‑138 (MQ=255)
            tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAATTTACCAGCGCCGCCTTCTGCcgtccactgcact                                                                                                                                >  1:480827‑M1/1‑130 (MQ=255)
                cgaaaattcAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                            <  2:291457‑M1/140‑18 (MQ=255)
                 gcAAATTCAATAAGCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                           <  1:560531‑M1/143‑19 (MQ=255)
                    aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTAGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                        >  2:911256‑M1/1‑122 (MQ=255)
                         aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                   >  1:438777‑M1/1‑117 (MQ=255)
                         aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCAACTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                   <  1:202467‑M1/143‑27 (MQ=255)
                               cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                             <  2:530269‑M1/143‑33 (MQ=255)
                                tGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                            <  1:334998‑M1/143‑34 (MQ=255)
                                 ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAACAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                           <  2:215078‑M1/143‑35 (MQ=255)
                                      tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                      <  2:239581‑M1/143‑40 (MQ=255)
                                      tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                      <  1:48481‑M1/143‑40 (MQ=255)
                                                     ccTTCGCTCCTCAGCTTACTTTTCTGCCGACAAAAAAAAGCCGACGCGTCTGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtc                                                                                       <  1:353887‑M1/143‑55 (MQ=255)
                                                       ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgctcatgtcgg                                                                                     >  2:545328‑M1/1‑87 (MQ=255)
                                                        tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatgtcggt                                                                                    >  2:889611‑M1/1‑86 (MQ=255)
                                                                    tttctttTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                        <  2:361134‑M1/140‑70 (MQ=255)
                                                                    ttACGTTTCTACAGACCATAAAAAGGCGACTCATCAGTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgccttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                        <  2:253979‑M1/143‑70 (MQ=255)
                                                                                   cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                         <  1:748837‑M1/143‑85 (MQ=255)
                                                                                                aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctcaaacgtattccagatctcacacg                                            >  1:668173‑M1/1‑46 (MQ=255)
                                                                                                    atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgcgttcaacgtattccagatcgcaaaccgctt                                        >  2:462391‑M1/1‑42 (MQ=255)
                                                                                                    atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt                                        >  2:796998‑M1/1‑42 (MQ=255)
                                                                                                              ttAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                              <  1:754112‑M1/143‑112 (MQ=255)
                                                                                                                   aaTCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcacgacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                         <  2:438777‑M1/143‑117 (MQ=255)
                                                                                                                    aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagctcgcacaccgcttcgccgttcacaattcc                        >  1:198203‑M1/1‑26 (MQ=255)
                                                                                                                         tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccattcacaattccgacag                   >  1:119676‑M1/1‑21 (MQ=255)
                                                                                                                               aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg             >  2:345301‑M1/1‑15 (MQ=255)
                                                                                                                               aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg             >  1:566461‑M1/1‑15 (MQ=255)
                                                                                                                                gcgcCGCCTTCTGCcgtcccctgcactgcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc            <  2:480827‑M1/143‑130 (MQ=255)
                                                                                                                                      ccTTCTGCcgtcccctgcacttcaaggatgcgcccgtctgcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctac      <  1:789711‑M1/143‑136 (MQ=255)
                                                                                                                                        ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacca    <  1:796998‑M1/143‑138 (MQ=255)
                                                                                                                                          cTGCcgtcccctgctcctccccgatgcgcccgtcttcggtcagcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatc  <  2:452243‑M1/143‑140 (MQ=255)
                                                                                                                                             |                                                                                                                                           
ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT  >  NC_000913/3815717‑3815997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.