| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 671548 = | 57 (1.100) | 4 (0.080) | 3/260 | 7.6 | 7.1% | coding (58/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913 | 671580 = | 52 (1.090) | coding (26/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCAATGGAAAAAGTGTGGTGTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACGGATGCTTGGCAGCTTACGAA > NC_000913/671438‑671720 | gtCAATGGTAAAAGTGTGGTGTTCTGCGAATCCTTGAGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAAGAACAGAGGATCGTTACCAAGTCAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGa < 1:382973/142‑1 (MQ=255)aTCAATGGAAAAAGTGTGGTTTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGa < 1:704386/143‑1 (MQ=255)aTCAATGGAAAAAGTGTGGTGTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGa < 1:589768/143‑1 (MQ=255) tGGAAAAAGTGTGGTGTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTAGCAAGTAAAAGATACGCCGCGCGCAGCCGGTCATTGAGCTGCGCGCGGAgtggc > 2:950782/1‑140 (MQ=255) aGTGTGGTGTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCATTCCTTGAGCTGCGCGCGGAGTGGTTCCGGGt > 2:351760/1‑143 (MQ=255) tgtgGTGTTCTTCAAATCCTTGTGCCGCAACAACCCGACGAACAACGCCCCGGCTGCCCCGCAACAACACAGCAGCCTGACCAAGAAAAACATACGCCGCCCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTAc < 1:726376/143‑1 (MQ=255) ggtgTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACacc > 2:19007/1‑141 (MQ=255) ggtgTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAAc < 2:812037/143‑1 (MQ=255) tgtTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTCAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGCGCTGTTCCGGGTACCACCg > 2:515765/1‑143 (MQ=255) gtTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCACCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACACCCGa > 1:328800/1‑143 (MQ=255) cttcGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc > 1:154751/1‑143 (MQ=255) ttcGAATCCTTGTGCCGCAGCTACCTGCCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCCTCATTGAGCTGCGCGCGGAGCTGTCCCCGGTACAACCAActca > 2:484621/1‑143 (MQ=255) tcGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatcgt > 1:76690/1‑141 (MQ=255) aaTCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGGACAACCGAATCATCAg > 1:543073/1‑143 (MQ=255) gtgCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCa > 1:579509/1‑143 (MQ=255) gCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCACGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGGTCTTCCGGGTCCAACCGAATCATCAGTTACCCCGCgtg > 1:502928/1‑143 (MQ=255) gCAGCTACATGTCGAACTGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGTGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCgtg < 2:444871/143‑1 (MQ=255) tACCTGACGAACAGCGTCCTGGCTTTCCGGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGga < 2:950892/143‑1 (MQ=255) tACCTGACGAACAGCGTCCGGGCTGTCCTGCAATACCAGAGTATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGga < 1:873071/143‑1 (MQ=255) aCCTGACGGACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGGGTTGTTCCGGGTACACCCGAATCATCAGCTGCCCAGCGgcgtgggg > 2:102880/1‑141 (MQ=255) ccTGACGAACAGCGTCCTGGTTTTACTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGgaga < 2:489126/143‑1 (MQ=255) aCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGAcgcg > 1:452509/1‑143 (MQ=255) gCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGc < 2:452509/143‑1 (MQ=255) ttCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGGGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCGGGAGt > 1:317078/1‑143 (MQ=255) tGCAATAACAGAGGATCGTTACCAAGTAAAAGGTACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGGGGAGACCCGTGCAGGCGTTGCCGGAgcaacc > 2:500221/1‑138 (MQ=255) tGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGAGCTGGCAGTCATCGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATcc < 1:947436/143‑1 (MQ=255) aaTAACGGGGGATCGTTACCAGGTAAGGGGTACGCCGCGCGCAGCCAGTCTGTGAGCTGCGCGCGGAGTGGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGtt < 2:154751/143‑1 (MQ=255) aaTAACGGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGTGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGtt < 2:258306/143‑1 (MQ=255) aaTAACACAGGATCGTTACCTAGTAAAAGATACGCCGCTCGCATCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGGGACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGtt < 1:12699/143‑1 (MQ=255) aTAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTtg < 1:502724/143‑1 (MQ=255) caCAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGTGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTtgtg < 1:515765/142‑1 (MQ=255) aCAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTGCCCAGCGTGGTGGAGACGCGTGCAGGCGCTGCCGGAGGATCCGTTGTgg > 1:613622/1‑143 (MQ=255) cAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGCGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGt > 2:303783/1‑143 (MQ=255) cAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTGGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGt < 1:97574/143‑1 (MQ=255) cggggATCGTTACCAAGTAAAAGGTACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTc < 2:798993/140‑1 (MQ=255) gATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACg > 1:139127/1‑143 (MQ=255) aTCGTTATCAAGGAAAAGAAACGGCGCGCGCAGCCCTTCATTGAGCGGCGCGCGGAGTTGTTCCGGGTACAACCGAATCGTCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGt < 1:402394/143‑1 (MQ=255) gccAAGTCATAGAGACGCGGCGCGCAGCCCTGCATGGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGttc < 2:751537/142‑1 (MQ=255) acgaaatAAAATCTACGCCGTGCGCAGCCCTTCATTGAGCTGCGCGCGCAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGttc < 2:547385/137‑1 (MQ=255) aCCGAGTAAAAGCTACGCCGCGCGCAGCCCCTCATTGAGCTGCGCGCGGCGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGTCGCGCTCTGCGGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGttc < 2:886737/143‑1 (MQ=255) cAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGGACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTCTCCGTTGTGGTCGGCGTCTGttctt > 1:478095/1‑143 (MQ=255) ggaaaaGAGACGCCGCGCGCAGCCCTGCATTGAGCTGCGCGCGGAGTTGTGCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTtcgt < 1:229391/141‑1 (MQ=255) tgactgATACGCCGCGCGCTGGGCTTCATTGGGCTGCGCGCGGAGTTGTTCCGGGTACAACCGCATCATCAGTTACCGCGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTtcgtc < 2:574224/138‑1 (MQ=255) aaaaGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTtcgtcg < 1:575259/143‑1 (MQ=255) cgacaCGCCGCGCGCACCGCTTCAGTGAGCGGCGCGCGGAGTTGTTCCGGCTACAACCGGATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 1:165925/139‑1 (MQ=255) gctACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGCGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAAc < 2:608264/141‑1 (MQ=255) cgcAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCgca < 1:608144/143‑1 (MQ=255) aGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACCACCGAATCATCAGTTACCCAGCGTGGAGGATACGCGGGGAGGCGCTCGCGGCGGAGCCGGTGCGGCCGACGTGTGGTCGGCGTCTGGACGACTATCGggagca > 2:85479/1‑143 (MQ=255) cccTTCATTGAGCTGCGCGCGGAATTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCCGGCGTTGCCGGAGTCCCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGACTATCCGCAGCACg > 2:308925/1‑143 (MQ=255) ccTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACgg < 2:129452/143‑1 (MQ=255) aGCTGCGCGGGGGGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGGTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTGGGTCGGAATATCCGCAGCACGGATGCTTGGc < 2:582325/143‑1 (MQ=255) aGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGGGGTGGAGACGCGTGCAGGCGTTGCCGGAGTACCCGTTGTGGTCGCCGTCGGTTCTTCGTCGGAACGTATATCCGCAGCACGGATGCTTGGc > 2:605983/1‑143 (MQ=255) cgcgcgGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGACTATCCGCAGCACGGATGCTTGCCAGccc > 2:597585/1‑141 (MQ=255) gcgcgTAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACGGATGCTTGGCAGCTTa < 2:76690/143‑1 (MQ=255) gcgcgGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGCGTATCCGTTGTGGTCGACGTCTGTTCTTCGGCGGAACGCATCACCGGAGCCCGCATGCTTGGCAGCtgg > 2:712748/1‑141 (MQ=255) ggAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTCTCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACGGATGCTTGGCAGCTTACGaa > 1:151152/1‑143 (MQ=255) ggAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACGGATGCTTGGCAGCTTACgca > 1:953993/1‑141 (MQ=255) | ATCAATGGAAAAAGTGTGGTGTTCTTCGAATCCTTGTGCCGCAGCTACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACGGATGCTTGGCAGCTTACGAA > NC_000913/671438‑671720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |