| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1489690 | NA (NA) | 4 (0.080) | 3/264 | 7.7 | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1489696 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTCGAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCG > NC_000913/1489554‑1489834 | cTTCGAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGtttttt < 1:270057/143‑1 (MQ=255) ttCGAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGAGGGTAAACATGGCTTGCAAGAATAAATGCAAAGAGCAGGTTG‑TTGCTTACAGGCTTAATGAGTGAAAGAGGCGGAGGTCTGTtc > 1:216970/1‑143 (MQ=255) tCGAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTGATTTACAGTCTTAATTAGTGAAAGAGGCGGGGGTTTTGtcc > 1:189325/1‑143 (MQ=255) tCGAAGCTATGCAAGGCTGCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTtcc < 1:249309/143‑1 (MQ=255) gAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGCATCTCTGCAGA‑CCCCTGTGGTTTATTTACAGTCTTCATGAGTGAAAGAGGCATAAGATTTTtcctc > 1:12521/1‑143 (MQ=255) tATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTAGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTGTTTGCTGCGccg > 2:782892/1‑142 (MQ=255) tGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATCTCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTCTTTTCCTCCGCCtgt > 1:632872/1‑143 (MQ=255) gCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCCCCttgg > 1:509984/1‑140 (MQ=255) cAAGGCTTCCACGCAGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGACAGAGGCGGCGGTCTTTTCCTCCGCCTGTgc > 1:754693/1‑143 (MQ=255) aGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTgcgc > 2:650660/1‑143 (MQ=255) ttCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGGTTTTTCATCCGCCTGTGCGCGTCa > 2:689304/1‑143 (MQ=255) cGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGtt < 1:457013/143‑1 (MQ=255) gCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAAGGAGTGAAAGAGGCGGAGGTTGTTTCCTCCGCCGGTGCGCGTCAGAGTTTAGCGAAtt > 1:200413/1‑143 (MQ=255) gTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:430356/1‑143 (MQ=255) gaTTGGGGGAGGAGGTGGGAAGCATGGGGTGCAGGAAGATCGGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc < 1:326893/142‑1 (MQ=255) gcgcAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCATGAGAGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc > 1:901705/1‑143 (MQ=255) cAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:811710/143‑1 (MQ=255) tAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGa > 2:64198/1‑143 (MQ=255) tAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGa < 1:64198/143‑1 (MQ=255) aCATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACAAAGc > 2:323725/1‑143 (MQ=255) aCATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGGTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGACGc > 1:690547/1‑143 (MQ=255) aTGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATACGCCGTGTGACGCAGCCa > 1:231774/1‑143 (MQ=255) ggCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCata < 1:893523/143‑1 (MQ=255) tGCATGAATATCTGCAGA‑CTCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGACTTTTTCGGGTGGACTAGGAAGTTCTGTGACGAAGCCATATTCg < 2:430356/143‑1 (MQ=255) aTGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGCGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTa > 1:679071/1‑143 (MQ=255) atatCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATcat > 1:517885/1‑141 (MQ=255) tGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTATCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGACGCCATATGCGTTCTCGTCCCac > 1:510621/1‑142 (MQ=255) a‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGAc > 2:728925/1‑143 (MQ=255) aGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACg < 1:114849/110‑1 (MQ=255) aGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACg > 2:114849/1‑110 (MQ=255) aGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGtt < 1:835867/143‑1 (MQ=255) aGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGtt > 1:367882/1‑143 (MQ=255) tttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAGGCTGTGTGACGAAGCAATATTCGTTATCGTAGCAGGCGACCGTTTGCAcc > 2:467457/1‑143 (MQ=255) actCTTATTGATGGAACGAGGCGGAGGTTTTTTCCGCAGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTTGTTTTCTTACCAGGAGACCTAGGGCACCAGTTGTaaa < 2:162440/141‑1 (MQ=255) gTCTTGTTGGGTGAAAGAGGCGTAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAAt < 2:901705/143‑1 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAAt > 1:899120/1‑143 (MQ=255) tCTTCATGAGTGAAAGATGCGGAGGTTTTTGCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCTGGCTACCGTTTTCACCAGTTGTAAATc < 2:837242/143‑1 (MQ=255) ttAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACTGGAGTCACCAGTTGTAAATCGc > 2:620201/1‑143 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGCAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTCAATCGccc > 1:938004/1‑143 (MQ=255) aGTGAAAGAGGCGGAGGGTCGTTCCTCCGCGTGTGCGCGTCAGAGTTTAGCGATTTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAcgg < 2:632872/143‑1 (MQ=255) tGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAcggcg < 2:733080/143‑1 (MQ=255) tGAAAGAGGCGGAGGATTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACACGTTGTAAATCGCCCAcagcg > 2:23584/1‑143 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCAcggcgg < 2:736062/143‑1 (MQ=255) ggagGCGGAGGGTTTTTGCGCCGCCTGGGCGCGTCAGAGTTTAGCGAATTTTTGGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTGTTCACCAGTTGTAAATCGCCCACGGCGGTaa < 2:121406/142‑1 (MQ=255) gCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTaagtgc > 1:198541/1‑139 (MQ=255) gCGGAGGTTTATTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACGAAGCCACAATTTTCACCAGCAGTAAATCGCACAAGGGGGTAAATTc > 2:8693/1‑143 (MQ=255) tttttCCTCCGCCTGTTCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGCCACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCg < 1:903917/143‑1 (MQ=255) | CTTCGAAGCTATGCAAGGCTTCCACGCCGGATGGCGTAAATCCGGTATTGGCGGCGCAGATGGTAAACATGGCTTGCATGAATATCTGCAGA‑CCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCCATATTCGTTATCGTACCAGGCGACCGTTTTCACCAGTTGTAAATCGCCCACGGCGGTAATTTCCGTTTGCG > NC_000913/1489554‑1489834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |