| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,573,987 | G→A | 6.1% | pseudogene (69/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,573,987 | 0 | G | A | 6.1% | 222.6 / 3.7 | 66 | pseudogene (69/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (29/33); new base A (2/2); total (31/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
TATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCACGGGACAAAAAGGGCAAACTAGTCCAGTGGGAAAATAAAG > NC_000913/4573699‑4574267 | tATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAggg > 2:364143/1‑289 (MQ=255) tAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACt < 2:395412/289‑1 (MQ=255) cTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAAcc < 2:246000/289‑1 (MQ=255) cTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCAGTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAAcc < 2:505814/289‑1 (MQ=255) gATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGTGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCAttt > 1:546390/1‑289 (MQ=255) gATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCAt < 1:218842/287‑1 (MQ=255) aTGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCAtt > 1:258997/1‑287 (MQ=255) cGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCa < 2:145114/289‑1 (MQ=255) acagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGgc < 2:343199/289‑1 (MQ=255) acagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGgc < 1:364143/289‑1 (MQ=255) aaTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTc < 2:436557/272‑1 (MQ=255) aaTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTc > 1:436557/1‑272 (MQ=255) cGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTa < 2:258997/289‑1 (MQ=255) cGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCGGGGCGCATATCTTCCAGCGTAATACCTAGGGAat > 1:226960/1‑289 (MQ=255) aTCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATaa > 2:132252/1‑289 (MQ=255) aTCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATaa > 1:359347/1‑289 (MQ=255) gAAGGTTGGGTCTAGATGGAAAGCGTG‑CAAGTTTGGCTTCTCATCCAGATGAAACATTTATTTGTGTACCAAATGTCATTTCTACACTACCGGATATTCAAACCATTTATGTAACGCGTTAGACGTGCTGAAAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATGGTTGTCTGTTCAGGGAATGAACTTAATGCAATGGATCCCGCTTTTCTGAAAGTAAGGGCGCATATCTTCCAGCGTGATACTTAGGGAATATGGGCTTGTGTTGATAAAGAtttccat > 2:452107/1‑284 (MQ=255) ttGCTTTAAATGGAAAG‑GTGTCAAGCTGGGTTTGTCAACCAGATGAAACATTTATTGGTGTACCAAAAGGCATTTCTACACTACCGGATATTCAAAACATTGGTGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTaaa < 2:359347/288‑1 (MQ=255) tGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACt < 2:53145/183‑1 (MQ=255) tGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACt > 1:53145/1‑183 (MQ=255) aaaGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAGGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACATCCAGCATGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCTCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGc < 2:347294/289‑1 (MQ=255) aaGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCGGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGc < 2:226960/288‑1 (MQ=255) gTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGAc > 2:187380/1‑289 (MQ=255) g‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACa < 2:41927/288‑1 (MQ=255) tGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCt < 1:187380/288‑1 (MQ=255) gggTTTGTCAACCAGATGAAACATTTAGTGGTGTACCAAAAGGCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTgg < 2:541497/289‑1 (MQ=255) gTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCAt > 2:65185/1‑180 (MQ=255) gTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCAt < 1:65185/180‑1 (MQ=255) ttGTCATCCAGATGAAACCTTTATTTGTGTACAAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACTTGTAGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCt < 2:546390/289‑1 (MQ=255) cATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTgg < 2:569582/289‑1 (MQ=255) tATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCa < 2:306069/239‑1 (MQ=255) tATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCa > 1:306069/1‑239 (MQ=255) ggTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGgc < 1:224026/169‑1 (MQ=255) ggTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGgc > 2:224026/1‑169 (MQ=255) gtACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACa > 1:224061/1‑289 (MQ=255) tACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGc > 1:558671/1‑201 (MQ=255) tACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACaa > 2:226115/1‑289 (MQ=255) tACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACaa > 1:274927/1‑289 (MQ=255) tACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGGGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGc < 2:558671/201‑1 (MQ=255) gTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGAAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATtgtg > 1:471000/1‑288 (MQ=255) acTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc < 1:226115/289‑1 (MQ=255) gATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGaa > 1:180953/1‑279 (MQ=255) gATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGaa < 2:180953/279‑1 (MQ=255) gATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTAAACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGtata > 2:502814/1‑289 (MQ=255) tCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGcc < 1:536024/227‑1 (MQ=255) tCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGcc > 2:536024/1‑227 (MQ=255) tCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAg > 1:27003/1‑289 (MQ=255) aTTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa < 2:27003/287‑1 (MQ=255) aTTGAGGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCAtt < 1:452107/289‑1 (MQ=255) gCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTTGAAGCCCTGTATACGAAGTTGCATTCTTTAATGATTGTAATGAGcc > 2:46852/1‑288 (MQ=255) gCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGAACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGcc > 2:111484/1‑288 (MQ=255) tGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCa < 1:132252/289‑1 (MQ=255) aaCAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACg < 2:346217/249‑1 (MQ=255) aaCAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACg > 1:346217/1‑249 (MQ=255) aTTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCtatg < 2:422881/195‑1 (MQ=255) aTTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCtatg > 1:422881/1‑195 (MQ=255) ccagcAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCACGGGACaaa > 1:168699/1‑289 (MQ=255) cagcagGAAGTACTGCGTTGGATCGATGTCTGTTCAGGAACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCACGGGACaaa < 1:111484/288‑1 (MQ=255) agcagGAAGTACTGCGTTGGATCGATGTCTGTTCAGGAACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGAc < 2:33295/215‑1 (MQ=255) agcagGAAGTACTGCGTTGGATCGATGTCTGTTCAGGAACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGAc > 1:33295/1‑215 (MQ=255) cagGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa > 2:33482/1‑240 (MQ=255) cagGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa < 1:33482/240‑1 (MQ=255) gCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCt > 2:369232/1‑170 (MQ=255) gCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCt < 1:369232/170‑1 (MQ=255) aTGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTtgtg < 1:95888/99‑1 (MQ=255) aTGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTtgtg > 2:95888/1‑99 (MQ=255) tGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCACGGGACAAAAAGGGCAAACTAGTCCAGTGGGAAAATAAAg > 1:167335/1‑289 (MQ=255) | TATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG‑CAAGCTGGGTTTGTCATCCAGATGAAACATTTATTGGTGTACCAAAAGTCATTTCTACACTACCGGATATTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCACGGGACAAAAAGGGCAAACTAGTCCAGTGGGAAAATAAAG > NC_000913/4573699‑4574267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |