New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1097007 =	34 (0.870)	3 (0.080)	3/278	5.8	8.3%	intergenic (+178/+558)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097172 =	NA (NA)					intergenic (+343/+393)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCG  >  NC_000913/1096871‑1097145                                                                                                                                         |                                                                                                                                           tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttc                                                                                                                                      <  1:101812/143‑1 (MQ=255)  aCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtctact                                                                                                                                     >  1:170144/1‑143 (MQ=255)     ctgttGCGCAGTTGTATTCTTGACTGATTAACCAGACAGTTGATGTGAACGATTGCCCCTCGCCCTAACACACTGCGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTa                                                                                                                                  <  2:14518/140‑1 (MQ=21)      tctTGCGCATTTTTGTTGTTGGCTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaa                                                                                                                                 <  2:133777/143‑1 (MQ=255)      tctTGCGCATTTTGATTGTTGACTGAATAACCAAACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGGAATATACTACAAGCtcttcaataa                                                                                                                                 >  1:528257/1‑138 (MQ=38)       ctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTCTCGTACGCGCTCTTCTTTaaa                                                                                                                                >  2:422895/1‑143 (MQ=255)           cgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                                                            >  1:249875/1‑143 (MQ=255)             cATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGc                                                                                                                          >  1:406440/1‑143 (MQ=255)                    agtgctgACGGAGTACCCGGACAGTGGATGGGCACGATGTCCCATCGCCAGAACGGGCGTGGGCGGGGGCTCCCGGGGTGTGCAATATACGAAAACAAAGCCCGTACTTCCGTACGAGCTCTTCTTTAAATATGGCGGTGAgg                                                                                                                   <  1:369023/138‑1 (MQ=17)                       gttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                                >  1:665485/1‑143 (MQ=255)                       gtgagtagAGTAACCAGACATATGATGTGCAGCAGTTCCCCTCGCACTAACAGACGTGGGCGGGGGCCCCCAGTGTGTGAAATATACAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                                <  2:377470/136‑1 (MQ=18)                          gACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGa                                                                                                             >  1:473139/1‑143 (MQ=255)                                  aaCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcg                                                                                                     >  1:226476/1‑143 (MQ=255)                                  aaCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcg                                                                                                     <  1:425821/143‑1 (MQ=255)                                    ccAGGCAGTGGATGAGCACAATTTCCCCTCGCCCTAACAAACGTGGGCGGGGGCACCCGGTGTGTGCTTTTACCGTAAAAAAAGCTCGTACGTTCGTACGAGCTCGTCTTGAAATATGGCGGTGAGGGGGGGATTGACtcgct                                                                                                   <  2:624683/143‑1 (MQ=18)                                     cAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTGACtcgctt                                                                                                  >  1:50947/1‑143 (MQ=255)                                       gACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGCCtcgcttcg                                                                                                >  1:633800/1‑143 (MQ=255)                                            ttGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGTAATATACGAAAAAAAAGCCCGTACGTTCGTGCGAGCTCTTCTGTAAATATGGCGGTGAGGGGGGGGTTGACgcgcgtcgccggc                                                                                           >  2:356308/1‑139 (MQ=21)                                            tcgATGTGCACGATTCCCCCTCGCCCTACCAGACGCGGGCGGGGGCACCCGGTGGGTGCAATATACGACAAAAAATCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTCAGGGGGGGATTGACTCGCTtcgctcgc                                                                                           <  1:474186/141‑1 (MQ=18)                                                       gATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATCTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCGCGCgggagg                                                                                >  2:9326/1‑140 (MQ=255)                                                             cccTCGCCCTAGCAGACGTGGGCGGGGGCACCGGGTGGGCGCAATATACGAAAAAAAAGCCCCTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTTGCTTCGCTCGCCCTGCGGGCAGCCCGCt                                                                          <  1:362722/143‑1 (MQ=17)                                                              ccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc                                                                         >  1:541084/1‑143 (MQ=255)                                                                    ccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTGCTTTGGTGCGAGCTGTTCTTTAAATAAGGCGGGGAGGGGGGGATGGACTCGCTGGGCTCGCCCTGCGGGCAGCCCGCTCACTGCg                                                                   >  2:551548/1‑143 (MQ=17)                                                                        ggacgggTGGGCCGGGGCCCCCGGTGGGTGCAATAGACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa                                                               <  2:485624/137‑1 (MQ=11)                                                                         cAGACGTGGGCAGGGGCACCCGGTTTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTACTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc                                                              <  2:170144/143‑1 (MQ=255)                                                                              gTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGCGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt                                                         <  2:249875/143‑1 (MQ=255)                                                                                    gggggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa                                                   <  1:33430/143‑1 (MQ=35)                                                                                        gCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg                                               >  2:351824/1‑143 (MQ=32)                                                                                                          ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc                             >  1:691461/1‑143 (MQ=11)                                                                                                           taCGAAAAAAAAGCCCGTACTTTCGTACGGGCTCTTCTTTAAATATGGCGGTGGGGGGGGGTTTGACTGGCTGCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCCCGGTCTGTCCAACGGGCTGCCGCCAGTCGGCGAcc                            >  2:582027/1‑143 (MQ=11)                                                                                                                      aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg                 <  2:541084/143‑1 (MQ=32)                                                                                                                           gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtct            <  1:542225/143‑1 (MQ=32)                                                                                                                                   gTACGAGCTCGTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGATCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccccc    <  2:460383/143‑1 (MQ=17)                                                                                                                                     aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCg  <  2:50947/143‑1 (MQ=32)                                                                                                                                         |                                                                                                                                           TACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCG  >  NC_000913/1096871‑1097145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.