New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1097172 =	NA (NA)	3 (0.080)	3/278	5.8	12.7%	intergenic (+343/+393)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097188 =	21 (0.540)					intergenic (+359/+377)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTT  >  NC_000913/1097039‑1097293                                                                                                                                      |                                                                                                                          tggACTCGCTTCGCTCACCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc                                                                                                                  <  2:406440/141‑1 (MQ=25)   gACTCCCTCCGCCCCCCCGCCGGGCAGCCCGCTCACCGCGTTCCCGCCCTGTCTAACGGGCTGTCGCCAGTCGCCGCCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt                                                                                                                <  1:224210/143‑1 (MQ=11)    aCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCACCCCCCCGGTGTGTGGATCACACGAAAAAAAAGCCCGTACTTTCGTa                                                                                                               >  2:7081/1‑143 (MQ=255)      tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg                                                                                                             >  1:334887/1‑143 (MQ=35)      tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCAAAATGGCTGGCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCGCGTACTTTCGTACg                                                                                                             >  1:488531/1‑143 (MQ=255)       cgcgcggctcccCCTGCGGGCCGCCCGCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCGGTCGTCCTCCCCCGGTCGAGGCTGCTCATCCCCCCGGTGTGTGCAATACCCGAAAAAAAAGCCCGTACTTTCGTACGa                                                                                                            <  2:294361/137‑1 (MQ=11)               tcgcCCTGCGGGCAGCCCGCTCCCTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                    <  1:502168/143‑1 (MQ=25)                             gtccGCTCAGTGTGTTGAGGGTATGTCCAACTGGCTGTCGCCGGATGTCGACCCCCGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                      <  1:384304/141‑1 (MQ=11)                                    cACGGCGTTCTTGGTGTGTCCACTTGGCTGTCGCCAGTTGTCGCCTCCCGATCGGGGTTTCTCATCCCCCCGGTGTGTGCAATACACTAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                               <  2:672132/143‑1 (MQ=11)                                                  tcggTCCAACTGGCTGTCGCCTGTTGTCGCCCCCCGGTCGGGGCTTCTCATCCCCCCGTTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt                                                                 <  2:488531/140‑1 (MQ=255)                                                      tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                           >  2:204282/1‑97 (MQ=38)                                                                    gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACttt                                                                                                                   >  2:478099/1‑75 (MQ=40)                                                                            tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTa                                                                                                               >  2:503526/1‑71 (MQ=40)                                                                            tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                       >  1:160906/1‑143 (MQ=35)                                                                              gACCCCCGGTCGCGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                     <  1:247725/143‑1 (MQ=21)                                                                               aCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                    >  1:523981/1‑143 (MQ=34)                                                                                         ggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                    >  2:576919/1‑117 (MQ=33)                                                                                         ggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                    <  1:576919/117‑1 (MQ=32)                                                                                          gggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGGCCGCTCACTGGGGTCACGGTc                         >  2:501660/1‑143 (MQ=12)                                                                                          ccgCTTCCCATCCCCCCCGTTGCGGCAATACACGAACAAAAAGCCCGTACTTTCGTACGAGCTCTGCTCTAAATACGGCGGTGAGGGGGGGCTTGACTCGCTGCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc                         <  1:182929/141‑1 (MQ=11)                                                                                             cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                       <  1:113878/142‑1 (MQ=32)                                                                                             cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                       >  2:113878/1‑142 (MQ=32)                                                                                              ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCTCTCGCCCTGCGGGCCGCCCGCTCGCTGCGTTCACGGTCTGtg                     >  1:75329/1‑142 (MQ=255)                                                                                              ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGc                                              >  2:115959/1‑118 (MQ=32)                                                                                              ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGc                                              <  1:115959/118‑1 (MQ=32)                                                                                              ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                     <  2:160906/143‑1 (MQ=32)                                                                                                     ccccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg              >  2:189430/1‑143 (MQ=32)                                                                                                      cccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCCCCTGGc             >  1:467059/1‑143 (MQ=17)                                                                                                                 tgCAATACCCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGACGGTGAGGGGCGGGTTGACTAGCTTAGCTCGCCACGCGGCCAGCCCGCAGACTGGGGTCACGGTCTGTCCAGCTGGCTGCCGCCCGtt  >  1:153293/1‑143 (MQ=11)                                                                                                                                      |                                                                                                                          TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTT  >  NC_000913/1097039‑1097293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.