New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3877665	NA (NA)	3 (0.080)	3/270	5.7	NA	noncoding (80/98 nt)	RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3877676	NA (NA)					noncoding (91/98 nt)	RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877526‑3877804                                                                                                                                            |                                                                                                                                            ttGCGGATTGCAGAAATGAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                                                                          <  2:403350/143‑1 (MQ=255)  tGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACATCATCACATACCATTTTATTGCAAGATTTTCGTAGGCCTGATAAGc                                                                                                                                         <  1:682860/143‑1 (MQ=37)     ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTGCGTAGGCCTGATAAGCGTa                                                                                                                                      <  1:488906/143‑1 (MQ=255)     ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCCTTTCTGACAGCGTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa                                                                                                                                      <  1:446909/143‑1 (MQ=25)            aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATTAGCGTAGCGCATc                                                                                                                               >  1:23138/1‑143 (MQ=255)              aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGTCCTGATAAGCGTAGCGCATCAg                                                                                                                             >  2:601730/1‑143 (MQ=255)                 gaaaaaGGGCGGAGACGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                                                          <  1:228677/142‑1 (MQ=255)                    aaaGGGCGGAGATCATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAATTAAATACATTTCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGc                                                                                                                       >  1:665762/1‑143 (MQ=255)                                     tcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                                                                      >  1:627814/1‑143 (MQ=255)                                        gCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCATTATCCGGCCTACAAAATCATGAAACTTCAATACATTGCAAGCTTTTCGTAGGCCTGATAAGCGGACGGCCTCAGGCACGCGCGAACAGATGGCGCCAttc                                                                                                   >  2:14458/1‑142 (MQ=18)                                             tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAGTTCAGTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTACCGCCATTAAagat                                                                                              >  2:462085/1‑143 (MQ=255)                                             tttCTTAGAGCGTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAatat                                                                                              <  1:92167/143‑1 (MQ=255)                                               tCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACCTTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCg                                                                                            <  1:74556/143‑1 (MQ=255)                                                 ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCAACTAGTGACCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGat                                                                                          <  1:521694/143‑1 (MQ=25)                                                 ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAACATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTACATATCGag                                                                                          >  1:54037/1‑142 (MQ=255)                                                  tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGata                                                                                         <  2:551019/143‑1 (MQ=255)                                                   ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCGTGATAACCGTAGCCCGTCAGCCTCGCTCGCTTGGTTAGCTGCATTAAATATCTatat                                                                                        >  1:365640/1‑143 (MQ=21)                                                   ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCCCGCTCGCATGGTTAGCGCCATTAAATATCGatat                                                                                        >  2:12109/1‑143 (MQ=255)                                                       cttcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCCCATCAGGCACGCCCGCACGGTTAGCGCCATTAGATATCGATACTcgc                                                                                    >  1:667354/1‑143 (MQ=21)                                                              ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAACATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAACGCCATTAACTAGCGATAGTCGCCGCTTTc                                                                             >  2:31671/1‑143 (MQ=21)                                                                ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                           <  2:456936/143‑1 (MQ=255)                                                                ggATGAGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                           <  1:221470/143‑1 (MQ=255)                                                                   tGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc                                                                        <  1:599338/143‑1 (MQ=255)                                                                       gcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                                                                    >  1:674105/1‑143 (MQ=255)                                                                            aaCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctctgc                                                               >  1:220363/1‑141 (MQ=255)                                                                              cGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCAGCTTTAAGGGCGTGCTCTTCaa                                                             >  1:658841/1‑143 (MQ=255)                                                                               gCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt                                                            <  2:397169/143‑1 (MQ=255)                                                                                  ttATCCGGCCTACAAAATCATGCAAATTCAAGACATTGCAAGATTTTCGTAGGCCTGAGAAGCGTAGCGCATCAGTCACTCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaaa                                                         <  2:342712/143‑1 (MQ=255)                                                                                   tATCCGGCCTACAAAATCATGAAAATTCAATACTTTGCAATATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAAc                                                        <  1:211616/143‑1 (MQ=255)                                                                                      ccGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCa                                                     <  1:167987/143‑1 (MQ=255)                                                                                         gCCTATAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACgg                                                  <  2:30091/143‑1 (MQ=255)                                                                                             aCAAAATCATGAAACTTCAATACATTGCAAGATTTCCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg                                              <  2:633565/143‑1 (MQ=255)                                                                                              cAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCgg                                             >  2:236704/1‑143 (MQ=255)                                                                                               aaaaTCATGATAGTTCATTGCATTTCAAGATTTTCGTAGGCGTGATAAGCGTAGCGCATCTGGTACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAATCGCACGGCGCGGt                                            <  2:556955/143‑1 (MQ=255)                                                                                                                  aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                              <  1:68517/106‑1 (MQ=255)                                                                                                                  aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                              >  2:68517/1‑106 (MQ=255)                                                                                                                      tGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGCTATTCGCCGCTTTCAGGGCGCTCTCTTCCATAAACGCACGGCGCGGTTCCACGGCGTCGCCCATCAGCgt                     >  2:403812/1‑143 (MQ=255)                                                                                                                         aaGGTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCGCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggt                  <  2:692694/143‑1 (MQ=255)                                                                                                                             ttttCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaac              <  2:23138/143‑1 (MQ=255)                                                                                                                                        cTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCAATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAGCAACTGGTCGgc   >  2:483789/1‑143 (MQ=255)                                                                                                                                        cTGATAAGCGTAGCGAATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTAAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGGGAACAACTGggcggc   >  1:240791/1‑143 (MQ=255)                                                                                                                                         tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca  <  2:365640/143‑1 (MQ=255)                                                                                                                                         tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca  <  1:64426/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877526‑3877804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.