| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,023,805 | (CTTTA)2→1 | intergenic (+127/‑159) | fliR → / → rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2023801 = | 1 (0.020) | 54 (1.290) | 46/266 | 0.0 | 98.2% | intergenic (+123/‑167) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| ? | NC_000913 | = 2023795 | 1 (0.020) | intergenic (+117/‑173) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis | |||||
GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAGGTAAGGGGAATTATC > NC_000913/2023661‑2023942 | ttagtgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacattt < 1:379038‑M1/3‑1 (MQ=255) agttaattgtcattaagataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTAc > 2:537794‑M1/139‑143 (MQ=255) gaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACttt > 2:574199‑M1/136‑143 (MQ=255) attgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTaa > 2:598978‑M1/134‑143 (MQ=255) tgccattaatataattccgtaacgtttatcatgttatcctaagtgttatccgaaaaataatacctacgaacatcttccaggctactcctgcagagaaatcatttgttcaagctcactcacatatcgcaacaTTTACTTTAAGa > 2:786898‑M1/132‑143 (MQ=255) attaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAAt < 1:70853‑M1/16‑1 (MQ=255) attaatataattccgtaacgtttaccatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGAAAAt < 2:385256‑M1/16‑1 (MQ=255) aatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTcc > 1:25683‑M1/125‑143 (MQ=255) atctaagtccgtaacgtttatcatgttatccgaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCa > 2:149573‑M1/124‑143 (MQ=255) taattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaaccTTTACTTTAAGACAATTCCA‑GGc < 1:260621‑M1/23‑1 (MQ=255) aattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatctcaacaTTTACTTTAAGACAATTCCA‑GGCa < 2:662714‑M1/24‑1 (MQ=255) cgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATta > 1:323581‑M1/115‑143 (MQ=255) taacgtttagcatgttatcctaaggcttagccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATtata > 2:466781‑M1/113‑143 (MQ=255) aatctttatcatgttatcctaaggattatccgaaaaataatacccacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaataTTTACTTTAAGACAATTCCA‑GGCAAATTATac > 1:44814‑M1/112‑143 (MQ=255) cgtttatcatgttatcctaaggattatccgaaaaattatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATacaa > 1:57687‑M1/110‑143 (MQ=255) gtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATacaac < 2:655608‑M1/35‑1 (MQ=255) atcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACtt < 2:604958‑M1/39‑1 (MQ=255) attttatcttaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTAc > 1:292440‑M1/102‑143 (MQ=255) atgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgtattaggctccctcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTAc > 1:548280‑M1/102‑143 (MQ=255) ggctaccctcaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACg > 1:569060‑M1/101‑143 (MQ=255) gttatccgaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACgg > 2:145634‑M1/100‑143 (MQ=255) ttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACggg < 2:304409‑M1/45‑1 (MQ=255) ctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGt > 2:672049‑M1/94‑143 (MQ=255) ctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGt < 1:604709‑M1/50‑1 (MQ=255) ctaaggatgacccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGt > 1:344657‑M1/94‑143 (MQ=255) aaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTaa > 1:363168‑M1/92‑143 (MQ=255) tatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGc > 1:656398‑M1/86‑143 (MQ=255) cgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATCCAACACTTTACGGGATAGTAAGTCCGCCTGa < 2:761365‑M1/62‑1 (MQ=255) gaaaaataatacctacgaacatcttccagggtacgcctgcagcggagtatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGGCTGaa < 1:375126‑M1/63‑1 (MQ=255) gaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCCACTTATCCAACCCTTTCCGCGTTAGTAACTCCGCCTGaa < 1:198275‑M1/63‑1 (MQ=255) aaataatacctacgaacctcctccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaaaa > 1:750482‑M1/78‑143 (MQ=255) atactacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATc > 1:269069‑M1/76‑143 (MQ=255) aatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 1:671522‑M1/74‑143 (MQ=255) aatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 1:684392‑M1/74‑143 (MQ=255) aatacctacgaacatcttccaggatacccctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 1:330636‑M1/74‑143 (MQ=255) tacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga > 2:213105‑M1/72‑143 (MQ=255) acgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTg > 1:391385‑M1/67‑143 (MQ=255) gtCCAGGCTACTCGTGCAGCGAAATATTTGTTTTACGGTCCCTCACCTATCGTAACCT‑‑‑‑TTTCCTTAAGGAC‑ATTCCAGGGCAATTAAAACAAC‑CTTTGCGGGAAAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAg < 2:591350/142‑1 (MQ=255) aggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGa < 1:126758‑M1/90‑1 (MQ=255) aggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGa < 1:407023‑M1/90‑1 (MQ=255) atactcctgcagcgaaatatttgttttaagctcactcacatatctcaactTTTATTTTAAGACAATTCCA‑GGCAAATGATACAACACGTGACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGAccc > 1:137993‑M1/51‑143 (MQ=255) tactcctgcagcgcaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCa > 2:305886‑M1/50‑143 (MQ=255) tcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCAtgt > 2:68928‑M1/47‑143 (MQ=255) ctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATAGCGAGAGGTGCGCATTAGGTGACCCAtgttg < 1:716093‑M1/99‑1 (MQ=255) tgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCAtgttgt > 1:456199‑M1/44‑143 (MQ=255) gttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCatga > 1:385256‑M1/29‑143 (MQ=255) ttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCatgat < 1:637087‑M1/116‑1 (MQ=255) taagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGaa > 2:773626‑M1/25‑143 (MQ=255) agctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTGCGCG‑TTAGACATGATgaaag < 1:381058‑M1/121‑2 (MQ=255) gctcactcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAata > 2:38352‑M1/22‑143 (MQ=255) ctcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAg > 1:604958‑M1/17‑143 (MQ=255) cgcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAg > 2:260621‑M1/17‑143 (MQ=255) tcacatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACACCACTTTACGGGATAGTAGGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGGAGTATTCAgg < 1:150879‑M1/128‑1 (MQ=255) acatatcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAGGTa < 1:540493‑M1/130‑1 (MQ=255) tcgcaacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGCGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAGGTAAgggg < 2:372394‑M1/135‑1 (MQ=255) gcaacaTTTACTTTAAGACAATTCCA‑GGCAAGTTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATAGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTGGTCATGATGAAAGATTCAGGTAAGGGgac < 2:172659‑M1/137‑2 (MQ=255) aacaTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCCGGTGAGGGGAAtt < 1:58665‑M1/139‑1 (MQ=255) atttactttaAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTGCGACTGAAAAATCGAGAGAGTGGCGCATTAGGTGACAAGTGTTGTTCCGTATAAGAAAAGACG‑AGTATTCAGGTAAGGTGAAGTATc > 2:197549/2‑143 (MQ=255) aTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAGGTAAGGGGAATTATc < 2:497488‑M1/142‑1 (MQ=255) | GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGT‑TTAGTCATGATGAAATATTCAGGTAAGGGGAATTATC > NC_000913/2023661‑2023942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |