New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423665 =	NA (NA)	6 (0.140)	5/280	5.6	10.8%	intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA of rrnD operon
	?	NC_000913	= 4040683	50 (1.120)					intergenic (+47/+223)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913/3423529‑3423800                                                                                                                                         |                                                                                                                                        aCTGCCGCCAGACAAATTCTTTTCTATTGTGCCGAGCTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGc                                                                                                                                   <  1:214995/143‑1 (MQ=255)      cgccAGACAATTTCTTTTCTAATCTGCCTAACTTTAATCTAAATTGTGGTGTTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGc                                                                                                                              <  1:118951/143‑1 (MQ=37)        ccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGAGACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAg                                                                                                                            <  1:63420/143‑1 (MQ=255)         cAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGACTGGCAGt                                                                                                                           >  2:317210/1‑143 (MQ=255)            aCAAATTCTTTTCTATGCTGCGGAACGTTACCCTAAAACGTGGGGCTGATACCCAGAGTCGAACTGGGGACCTCCCCCTTACCATGTGTGCGCTCTAGCAGCTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTcc                                                                                                                        <  2:319472/143‑1 (MQ=255)            aCAAATTCTTTTCTAATCTGCCGCACATTAACCTTAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGACGCCTGGCAGTTcc                                                                                                                        >  2:611398/1‑143 (MQ=255)                  tCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTTCTGATACCCAGAGTCGAACTGGGGACATCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCCCGCTAAATTTGATGCCTGGCCGTTCCCTAcgc                                                                                                                  >  1:748051/1‑141 (MQ=255)                   cTTCTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTActct                                                                                                                 <  1:65686/143‑1 (MQ=255)                    ttttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTCGCAGTTCCCTACtctc                                                                                                                >  1:495832/1‑143 (MQ=255)                        cgcaTCTGCCGAACTTTAACCGAAGAAGTGGTGCTGATACCCAGTGTCGACCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCAt                                                                                                            <  1:158124/140‑1 (MQ=37)                         tAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGCTGCCTGGCAGTTCCCTACTCTCGCATg                                                                                                           >  1:20380/1‑143 (MQ=255)                         caaTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATg                                                                                                           <  1:414735/142‑1 (MQ=255)                           aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg                                                                                                         >  1:103486/1‑143 (MQ=255)                            ccggCCGAACTTTCGCCGACGCAGTGGTGCTGGTACCCAGAGGCGTGCTGGGGCCCTCACCCTTACCAAGTGTGCGCTCTACCAATTGCGCCATATCAGCATGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgggg                                                                                                        <  2:246257/140‑1 (MQ=25)                                ccGAACTTTAACCTAAACAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAc                                                                                                    <  1:694905/143‑1 (MQ=255)                                     cTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTCCCAAGAGTGCGCTCTACCAACTGAGCCATCTCAGCCCGCTAAATTTGATGCCCGGCAGTTCCCTACTCCCGCATGCGGAGACCCcac                                                                                               >  2:605463/1‑143 (MQ=37)                                      tttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTTTTGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca                                                                                              >  1:766533/1‑143 (MQ=255)                                          aCCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTAc                                                                                          >  1:744095/1‑143 (MQ=255)                                              aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGCTGCGCTCTACCAACTGAGACATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATc                                                                                      >  1:762633/1‑143 (MQ=255)                                               aaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATACCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTCCCATCg                                                                                     >  2:801035/1‑143 (MQ=255)                                                  aggggtgCTGATACCCGGAGTCGAACGGGGGACCGCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACCCTCGCATGGGGAGACCCCACACTACCATCGgcg                                                                                  <  1:652712/140‑1 (MQ=37)                                                         cTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGGTACGGc                                                                           >  1:75075/1‑143 (MQ=255)                                                               cccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCa                                                                     <  1:747586/143‑1 (MQ=255)                                                                 cAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACCACCATCGGCGCTACGGCGCTTCACt                                                                   >  2:803271/1‑143 (MQ=255)                                                                 cAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACt                                                                   <  1:374370/143‑1 (MQ=255)                                                                  agagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACtt                                                                  <  2:103486/143‑1 (MQ=255)                                                                      tCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGa                                                              <  1:737020/143‑1 (MQ=255)                                                                        ggaCTGGGGGCCTCACACCTACCAAGGGTGCGCTCTACCAACTGCGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGt                                                            <  1:283772/141‑1 (MQ=255)                                                                        gAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTAAACTCGCATGGGGAGACCCCACACTACCACCGGCGCTGCGGCGTGTTCCTTCTGGGt                                                            >  1:672857/1‑143 (MQ=25)                                                                         aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGCGACCCCACACTACCACCGGCGCTACGGCGCTTCACCTCTGactc                                                           >  1:181406/1‑140 (MQ=25)                                                                                 aCCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATgg                                                   >  1:659341/1‑143 (MQ=255)                                                                                   cTCACCCTTAACAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGGTCCCTACTCTCGCATGGGGCGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCACgggc                                                 >  2:490130/1‑142 (MQ=255)                                                                                    tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCCACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGt                                                <  2:100461/143‑1 (MQ=255)                                                                                          ttACCAAGGGGGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          >  1:198519/1‑143 (MQ=255)                                                                                             ccAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTGCGGCGTTACACTTCTGAGTGCGGCGTGGGGTCAGGTaggc                                       >  1:65215/1‑142 (MQ=18)                                                                                             ccAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGGATGGGGTGAGGTGGGa                                       >  1:442163/1‑143 (MQ=255)                                                                                              cAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGac                                      <  1:317210/143‑1 (MQ=255)                                                                                                     gcgcTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcgcg                               >  2:55994/1‑143 (MQ=255)                                                                                                                 cTGAGCCATATCAGCACGCTAACTTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCACACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCAGCGCGCTACGGCCGCCa                   >  2:445432/1‑143 (MQ=255)                                                                                                                      ccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaa              >  2:376488/1‑143 (MQ=255)                                                                                                                       cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCCTGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaaa             >  1:767502/1‑143 (MQ=255)                                                                                                                       cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGCTGGGACCACCGCCCTACGGCCGCCAGGCaca             >  2:78707/1‑141 (MQ=255)                                                                                                                                  gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAt  >  1:778545/1‑143 (MQ=32)                                                                                                                                         |                                                                                                                                        ACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913/3423529‑3423800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.