| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3679527 = | 45 (0.770) | 5 (0.090) | 5/274 | 7.7 | 10.1% | coding (109/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| ? | NC_000913 | 3679545 = | 45 (0.790) | coding (127/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTC > NC_000913/3679389‑3679668 | gCTAATTTTTTACAGATCATGTCCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATTCATGATTGAGCTTTCCGATAAAGGCGCGTACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGc < 1:185125/143‑1 (MQ=255)gCTAACTTTCTACAGATCCCGTTCACGACTCTGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGc < 1:76210/143‑1 (MQ=255) tAATTTTTGACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGccc < 1:277913/143‑1 (MQ=255) tttttACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCa > 1:434777/1‑143 (MQ=255) ttACAGTTCAGGTTTACGACCATGTCCAAGTAGATTGCCGTGATTGGCGGATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGt < 2:236520/143‑1 (MQ=255) cAGAGCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGa < 2:482143/143‑1 (MQ=255) aGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGGTACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGAt > 1:869328/1‑143 (MQ=255) aTCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCCATAACGCCCGACAAGACGATca > 2:1009560/1‑142 (MQ=255) aTCAGGTGTCCGTCTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGCTTCAGCTTTCCGATAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATcc < 1:29249/143‑1 (MQ=255) ttCACGACTAGGTCAAAAAACCGTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGc < 2:924477/143‑1 (MQ=255) tCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCa < 2:954882/143‑1 (MQ=255) tCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCa > 1:513035/1‑143 (MQ=255) aCGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCAtt > 1:70205/1‑143 (MQ=255) aCTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGACCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAAc < 1:405067/143‑1 (MQ=255) aTGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGt < 1:179338/143‑1 (MQ=255) tCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGGCGTTAAGCGCGGTTTCGGCGGCGATACCCTGAGCACTCCCGGCGATACCCCCCGGCAGGCCGCACCAGGCGCAGTCACCGTTCa > 2:899077/1‑143 (MQ=255) gccAAAAAGGTTGCCGTGATTGGCGCAGGCATGATTGAGCTTTCCGAGAGAGGCGCGGACGTTAAGCGAGCGTTCGGCGGCGATACCCTGAACCCTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCa < 2:576827/142‑1 (MQ=255) gccAAAAAGATTGCCGGGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCa < 1:928357/142‑1 (MQ=255) cAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAACGCGATTTGGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCAtt > 1:668606/1‑143 (MQ=255) aaaaaGATTGCCGTGATTGGCTGACGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTa < 1:714608/143‑1 (MQ=255) aaaaGATTGCCGTGATTGGCGAATGCTTTATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTGTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTAc < 1:872370/143‑1 (MQ=255) cGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATGGCCCGTCAGGTCGATCCTGCGGCGTTACCCGGTGATTACGTGACGgcgc > 1:78077/1‑143 (MQ=255) tGATTGGTGAATGCATGGTTGGGCTTTCCGAGGATTGCGGGGACGTGAAGCGCGGTTTCGGCGGCGATACCCTGAACGCTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTg < 2:65787/143‑1 (MQ=255) ggagtGGCGAATGCATGAGGGAGCTGTCCGGGAAGGGCGCGGACGTTAAGCGCGGTGTCGGCGGCGATACCCGGAACGCTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTg < 2:245547/139‑1 (MQ=255) tGGGGAATGCAGGATTGAGGTTCCCGAGAAAGGCGCGGGTGTTAAGGGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGaa < 1:225043/143‑1 (MQ=255) gAATGCATGATGGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGa < 1:968433/143‑1 (MQ=255) caTGCCTGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGAc < 1:904785/142‑1 (MQ=255) aTTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCGTTACGTAACGCGGCCGGGAACGGACAGATTTAg > 1:11838/1‑143 (MQ=255) ttGAGGTTTGCGCGAACTGCGCGGACGTTAAGCGCGGTTTCGCCGGCGATACCCTGAACACTCCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTACCCGTTCATTTCATAACGGCGCTGGGAACGGACAGTTTTAGc < 2:871673/143‑1 (MQ=255) ttCCGGGTATGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGCTCCCCTGATCTCTTCCTTCTATATCGCCCGTCAGGGCGATCCTGCGGCATTAACCGTTCATTACGTATCGGCGCTGGGAACGGACAGTTTTAGCCAGCAGa < 2:885012/143‑1 (MQ=255) cGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCACGTCAGGTCGATCCTGAGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATgg > 1:350586/1‑142 (MQ=255) gagaAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAgctgct > 1:114969/1‑143 (MQ=255) aaaGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATAGCCCGTCAGGTCGATCCTGCGGCAGTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGa < 2:525010/143‑1 (MQ=255) aGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATAGCCTGTCAGGGCGATCCTGCGGCACTCACCGTTCATTCCGTAACGGAGCTGGGACCGGACAGTTTTAGCCAGCAGATGCTGGACg > 2:803726/1‑143 (MQ=255) tAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCGTTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCg > 1:951022/1‑143 (MQ=255) gcgGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGCTGCTGGACGCCTGGCACGGCGAGAAc > 1:429684/1‑143 (MQ=255) gTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGtt < 2:429684/143‑1 (MQ=255) gTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGtt < 1:70667/143‑1 (MQ=255) gTTTCGGCGGCGAGACCCGGAGCCCTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTGCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGtt < 2:988924/143‑1 (MQ=255) gATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCt < 2:434777/143‑1 (MQ=255) aCCCCGAACCCTTCCGTCTATACCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGAc < 1:473279/143‑1 (MQ=255) ccTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGGTACTTCCCTGAccc > 2:682065/1‑143 (MQ=255) ttCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACAGACAGTTTTAGCCACCAGATGCTGGACGCCTGCCACCCCCTGAACCTTGATACGCCCCGGACCCCACgcgcgc > 2:314606/1‑138 (MQ=255) gcTATATCGCCGGTGGGGTCGGTCCGGCGGCATTAGGCGTTCATTACGTAAGGGCGCGGGGAGCGGACAGTTTTAGCCAGCAGATGCTGGACGGCTGGGACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAAc < 2:248067/142‑1 (MQ=255) tatCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTc < 1:661650/143‑1 (MQ=255) | GCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTC > NC_000913/3679389‑3679668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |