New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4235462 =	NA (NA)	4 (0.070)	4/268	8.1	7.1%	noncoding (42/77 nt)	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4235494 =	52 (0.940)					noncoding (74/77 nt)	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATC  >  NC_000913/4235352‑4235635                                                                                                                                               |                                                                                                                                              gcCACGATAGCTCGACCAATTGTCTGAGTAACCGCTATAAAGCGTGGCGCGGTTAATCCTCGTCGATATGTAGGCCGGATAAGGTGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc                                                                                                                                               <  2:530096/143‑1 (MQ=255)    aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTAc                                                                                                                                            >  1:651023/1‑143 (MQ=255)            tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTCGACCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACCCGGCCGCCGCTTGCCAGGCCAACAGGTCGAt                                                                                                                                    >  2:238784/1‑143 (MQ=37)                 ctaTGGTCTGTTTAGCTGCTATAAGGCGTGGAGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGa                                                                                                                               <  2:608695/141‑1 (MQ=25)                 cAATGGTCTGATGAACCGGTATAAAGCGTGGCGCGGGTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGa                                                                                                                               <  1:141735/143‑1 (MQ=255)                   agggTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGata                                                                                                                             <  2:787618/141‑1 (MQ=255)                        cTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTAc                                                                                                                        <  1:270638/143‑1 (MQ=255)                                 cGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTc                                                                                                               >  1:988579/1‑143 (MQ=255)                                 cGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTc                                                                                                               >  2:949359/1‑143 (MQ=255)                                 cGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTc                                                                                                               >  2:396228/1‑143 (MQ=255)                                   cTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCgg                                                                                                             <  1:577170/143‑1 (MQ=255)                                        acgCGTGGCGCGGTTAATCATCTTCGATATGTAGGCCGGCACCCCCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAAtt                                                                                                        <  1:89714/141‑1 (MQ=37)                                        aaGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAAtt                                                                                                        >  1:971216/1‑143 (MQ=255)                                          gCGTGGCGCGGTTAATCAGCGTCGATATGTAGGCCGCATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCCATTaa                                                                                                      <  2:813041/143‑1 (MQ=255)                                           cggggCGCGGTTAATCATGGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAAt                                                                                                     <  1:818665/140‑1 (MQ=255)                                           cGTGGCGCGTTTACACATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCATATTCGGCAATTAAt                                                                                                     <  2:911750/143‑1 (MQ=255)                                            ttgtcgtggTTAATCATCGTCGATATGTAGGCCGGATAAGGTGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATa                                                                                                    <  2:813906/136‑1 (MQ=255)                                                 gcgGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAg                                                                                               <  1:546965/143‑1 (MQ=255)                                                   ggTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCa                                                                                             <  2:49328/143‑1 (MQ=255)                                                   ggTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCACACAGGTCGATGCCGATCTGGACATCGTAGTGGGCAATGAATACATAGCa                                                                                             >  2:1055118/1‑143 (MQ=25)                                                      tAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACga                                                                                          <  1:125330/143‑1 (MQ=255)                                                         tcatcGTCGATATTTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCAACGCGATCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATATACACCGTATTCGCCAATTAATACATAGCACcattg                                                                                       >  2:400980/1‑143 (MQ=25)                                                           atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACgattgat                                                                                     <  1:163794/143‑1 (MQ=255)                                                           atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACgattgat                                                                                     >  1:933179/1‑143 (MQ=255)                                                              gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTaa                                                                                  <  1:863229/143‑1 (MQ=255)                                                              gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGACGCGACTTATCAGGCCTACAGGTCGATGCAGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGAGTaa                                                                                  >  2:212887/1‑143 (MQ=255)                                                               tcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGACCTACAGGCCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCCCGATTAATTaaa                                                                                 >  2:831629/1‑143 (MQ=255)                                                                      gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTAGCGTCTTATCAGGCGTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCtt                                                                          >  2:965226/1‑143 (MQ=255)                                                                        aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTtaa                                                                        <  2:121300/143‑1 (MQ=255)                                                                         ggCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTtaat                                                                       >  1:836494/1‑143 (MQ=255)                                                                          gCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGTCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTcaata                                                                      >  2:15723/1‑143 (MQ=255)                                                                          gCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGCTGCCGATATGTACATCGTATTCGGCAATTAATCCATAGCCCGATTGATTAAATACCCTtaata                                                                      >  2:348021/1‑143 (MQ=255)                                                                                      gTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTAAAGGTCGATGCCGATATGTACATCGTATTCGGAAATTAATATATAGCACGATTGATTAAATAACCTTAATAACAATgaagaag                                                          >  1:1009784/1‑137 (MQ=38)                                                                                          aCGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTAt                                                      >  2:949534/1‑143 (MQ=255)                                                                                             ccgcCTCCGGCAACCGGTGCCTCAGGCGACGCGGTCGCGTCTTAGCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTc                                                   <  1:470144/143‑1 (MQ=255)                                                                                              cgcATCCGGCAACCGAGCCCTGATGCGGCGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCg                                                  <  2:291157/143‑1 (MQ=255)                                                                                                 aTCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCa                                               >  2:1061109/1‑143 (MQ=255)                                                                                                 aTCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACATAACGTCGGCa                                               <  1:865265/143‑1 (MQ=255)                                                                                                  tCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCAt                                              <  1:685/143‑1 (MQ=255)                                                                                                     ggCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCAtttt                                           >  1:706001/1‑143 (MQ=255)                                                                                                          ccGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTAt                                      >  1:688945/1‑143 (MQ=255)                                                                                                           cgctGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATc                                     <  2:4120/140‑1 (MQ=255)                                                                                                            gATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATATCCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCa                                    <  2:563425/143‑1 (MQ=255)                                                                                                              ggccgggtGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGa                                  <  2:249510/136‑1 (MQ=255)                                                                                                                 cTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATaa                               >  1:104967/1‑143 (MQ=255)                                                                                                                   gATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAAt                             <  2:741992/143‑1 (MQ=255)                                                                                                                   gATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAAt                             <  1:294697/143‑1 (MQ=255)                                                                                                                    aTGCGCCGGGGTCGCGTCTTAGCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATc                            <  2:196044/143‑1 (MQ=255)                                                                                                                       cGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAGCCTTAATAACAATGCCGACGACATGTCGGCATTTTTTGATCAGATAAATcccc                         >  2:463437/1‑143 (MQ=255)                                                                                                                         aCGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCtt                       <  1:984491/143‑1 (MQ=255)                                                                                                                                 gcgTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTaa               >  2:939969/1‑143 (MQ=255)                                                                                                                                     cTTATCAGGCCTACAGGTCGATGAAGATCTGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTa           <  1:1000836/143‑1 (MQ=255)                                                                                                                                        ctCAGGCTTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATCGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACg        <  2:604462/142‑1 (MQ=255)                                                                                                                                        aTCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACg        <  1:464/143‑1 (MQ=255)                                                                                                                                         tCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATGGAAGATCCAACTTTATGTCGGCATTTTTTTATCAGATAAATCCACTTGTCTGTAATTTAACgg       >  1:243668/1‑143 (MQ=255)                                                                                                                                         tCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATACAGATACCTGCATTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACgg       >  1:243648/1‑143 (MQ=255)                                                                                                                                           aGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATCAATCCCCTTGTCTGTAATTTAACGGaa     >  2:162415/1‑143 (MQ=255)                                                                                                                                             gCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCACTTGTCTGTAATTTAACGGAAAt   >  2:505594/1‑143 (MQ=255)                                                                                                                                              ccTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGCCGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATc  <  1:1023560/143‑1 (MQ=255)                                                                                                                                              ccTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATc  <  2:530292/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              GCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATC  >  NC_000913/4235352‑4235635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.