Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)80 (1.060) 61/284 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)90 (1.190) 65/284 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 172 total aligned reads displayed.

GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173
                                                                                                                                              |                                                                                                                                             
gcgctgctgtccggcggtgcttgtgccgttacgcaccgccccgtcagtagctggacaggagggacagctgatagatacagaagccactggagcacctcaaaagcaccatcatacactaaatcagtaagttggcagcatcacct                                                                                                                                               >  2:1257043‑M1/143‑143 (MQ=255)
 aTGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAtttt                                                                                                                                              >  1:1038998/1‑143 (MQ=255)
  gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtg                                                                                                                                             <  1:1251606‑M1/3‑1 (MQ=255)
      tttCAGAATTTTAAGTGTTTCTCTCATTGTAGTCATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAAAAAGTGTTCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAATTAATTCAAAATTGTTCTTTATTTTGTgcc                                                                                                                                         <  2:968724/142‑1 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                       >  2:1117973‑M2/1‑142 (MQ=255)
         cAGAATTGTGAGTGCTTCGCGCATGGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                      >  2:765652‑M2/1‑141 (MQ=255)
          aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                     <  1:1011680‑M2/143‑4 (MQ=255)
           cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                    <  1:491063‑M1/12‑1 (MQ=255)
            aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAAGAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaa                                                                                                                                   >  1:506592‑M2/1‑138 (MQ=255)
                gtgctttggccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagacactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                               >  2:981215‑M1/127‑143 (MQ=255)
                gtgccgttgccgttacgcaccaccccgtcattagctgaacaggaggtacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                               >  2:813138‑M1/127‑143 (MQ=255)
                 tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagacactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCcaataaatg                                                                                                                              <  1:1008586‑M1/18‑2 (MQ=255)
                 tgagtGGTTGGCTCATTGTAGTAAGCTGAAAGTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCGTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgact                                                                                                                              >  2:575616‑M2/3‑133 (MQ=255)
                  gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagcaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccTTGTGCCGCCAATCAatat                                                                                                                             <  2:63184‑M1/19‑1 (MQ=255)
                   cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATc                                                                                                                            <  2:1137082‑M1/20‑1 (MQ=255)
                     tctgccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCtt                                                                                                                          >  1:738103‑M1/122‑143 (MQ=255)
                      gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                         >  1:1315363‑M2/1‑128 (MQ=255)
                       tgccgttacgcagcaccccggcaggagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaacaccccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCtttt                                                                                                                        >  2:228918‑M1/120‑143 (MQ=255)
                       cTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaact                                                                                                                        <  1:643169‑M2/143‑17 (MQ=255)
                        ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgcctacaactt                                                                                                                       <  2:88957‑M2/143‑18 (MQ=255)
                         tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                      >  1:1173521‑M2/1‑125 (MQ=255)
                           gCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                    >  1:539107‑M2/1‑123 (MQ=255)
                            ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcataccctaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTatcacaa                                                                                                                   <  2:507505‑M1/29‑4 (MQ=255)
                            cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                   <  1:938502‑M2/143‑22 (MQ=255)
                               aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                                >  2:324355‑M2/1‑119 (MQ=255)
                               aTGGTAGTAAGCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTGGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                                >  1:604784‑M2/1‑119 (MQ=255)
                                 tGTAGTAATATCAAACTTATATTGGGTTGGTGTGTTGAGGTAATAATCGAGCCTTAAATGCAGTTGTGCTATAGCCATGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagt                                                                                                              >  2:476482‑M2/1‑117 (MQ=255)
                                 caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                              >  2:1348085‑M1/110‑143 (MQ=255)
                                 aggagtaaacTCAAACTTATAGTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagt                                                                                                              >  1:444418‑M2/4‑117 (MQ=255)
                                      ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAAGAACTTTTCATGAAAATAGCCAg                                                                                                         <  2:122496‑M1/39‑1 (MQ=255)
                                       agtcttaaTCTTTTATTGGGGTGGTGTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttta                                                                                                        >  2:503723‑M2/3‑111 (MQ=255)
                                           tcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAg                                                                                                    <  2:1080431‑M1/44‑1 (MQ=255)
                                            cAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcatgactccaacttattgagagtgttttatgttc                                                                                                   <  2:887059‑M2/143‑38 (MQ=255)
                                               aCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaga                                                                                                >  2:1027793‑M2/1‑103 (MQ=255)
                                                  tataTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaggtaa                                                                                             <  1:423669‑M2/143‑44 (MQ=255)
                                                   tgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAGTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                            >  1:883506‑M1/92‑143 (MQ=255)
                                                    gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                           <  1:1245757‑M1/53‑1 (MQ=255)
                                                     aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCata                                                                                          <  2:639687‑M1/54‑1 (MQ=255)
                                                      ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccgacttattgatagtgttttatgttcagataatgcc                                                                                         <  2:536132‑M2/143‑48 (MQ=255)
                                                       tGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                        <  1:783809‑M2/143‑49 (MQ=255)
                                                         gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatcgatagtgttttatgttcagataatgcccga                                                                                      <  2:269567‑M2/143‑51 (MQ=255)
                                                         gggAGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTTTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                      <  2:1192101‑M2/143‑51 (MQ=255)
                                                             ggtTTGTTGAGGTAATAATAGAGCGTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagctaatgcccgatgac                                                                                  <  2:1195421‑M2/143‑55 (MQ=255)
                                                             ggacagctgatagaaagagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTa                                                                                  <  2:752822‑M1/62‑1 (MQ=255)
                                                                ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                               >  1:410616‑M2/1‑86 (MQ=255)
                                                                 agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTa                                                                              >  1:356639‑M1/78‑143 (MQ=255)
                                                                    tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                           <  2:441509‑M1/69‑1 (MQ=255)
                                                                    ggatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                           >  2:721735‑M1/75‑143 (MQ=255)
                                                                      aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagctaatgcccgatgactttgtcctg                                                                         <  2:1366708‑M2/143‑64 (MQ=255)
                                                                           aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATAAAGCGCTATTTACACCgaggat                                                                    <  2:665160‑M1/76‑1 (MQ=255)
                                                                            taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccatcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                   >  1:1292411‑M2/1‑74 (MQ=255)
                                                                             cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCAAATAAATATCTTTTCATACAATTAGCCAGAAAGGACGCGGCATACAGACCTACTtacaccgacgaacg                                                                  <  2:859977‑M1/78‑7 (MQ=255)
                                                                                 agccactggagcaccgcaaaaacaccatcgtacactaaatcagtaagttgacagcagtccgGTGTGCCGCCAAGAAATATCTTTTCATAAGATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                              >  2:815737‑M1/62‑143 (MQ=255)
                                                                                      ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCGCTGCTTGCCCAGCACg                                                         <  2:1168870‑M1/87‑1 (MQ=255)
                                                                                       tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagctaatgcccgatcaccttgtcatgcagctccaccgattttg                                                        >  1:197906‑M2/1‑63 (MQ=255)
                                                                                         gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                      >  1:1272245‑M1/54‑143 (MQ=255)
                                                                                           ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaa                                                    >  2:1038998‑M2/1‑59 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                <  1:281557‑M1/96‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                >  2:1283814‑M1/48‑143 (MQ=255)
                                                                                                ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                               >  1:977222‑M2/1‑54 (MQ=255)
                                                                                                 caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAACAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACCCCGATGATTTCCCAGCCCGTGAGGCTaaaa                                              <  2:1262544‑M1/98‑1 (MQ=255)
                                                                                                    gCAATCGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagagttttctgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                           >  2:680505‑M2/1‑50 (MQ=255)
                                                                                                     aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                          >  1:172846‑M1/42‑143 (MQ=255)
                                                                                                      acaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTACAACTTcc                                         <  1:147551‑M1/103‑1 (MQ=255)
                                                                                                       aTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttgttgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                        >  2:409044‑M2/1‑47 (MQ=255)
                                                                                                       aTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                        <  1:848942‑M2/143‑97 (MQ=255)
                                                                                                           ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagttaatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                    >  2:46359‑M2/1‑43 (MQ=255)
                                                                                                            tcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                   <  1:1103398‑M1/109‑1 (MQ=255)
                                                                                                            cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                   <  2:489502‑M2/143‑102 (MQ=255)
                                                                                                              atacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                 >  1:639687‑M1/33‑143 (MQ=255)
                                                                                                               gAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                >  1:823903‑M2/1‑39 (MQ=255)
                                                                                                               gAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgagagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                >  2:1255942‑M2/1‑39 (MQ=255)
                                                                                                               gAATGTAAGGAAGTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                >  1:31290‑M2/1‑39 (MQ=255)
                                                                                                                aaTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccag                               >  2:1010559‑M2/1‑38 (MQ=255)
                                                                                                                   ctaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATGTCGCAGCACGTGAGGTTAAAACTTCCTGATTCatgtaac                            <  1:348918‑M1/116‑4 (MQ=255)
                                                                                                                    taaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCTTTTCATACAATTAGCCAGAAAAGCCGCGGCATCTAGCCCTATCTACACCCATGATTTCGCAGCACCTCAGGTTAACACTCCCTGATCCCTGTcaca                           <  1:941876‑M1/117‑1 (MQ=255)
                                                                                                                    taaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTcaca                           <  1:925577‑M1/117‑1 (MQ=255)
                                                                                                                    tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                           >  1:1204401‑M2/1‑34 (MQ=255)
                                                                                                                    tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                           >  1:486756‑M2/1‑34 (MQ=255)
                                                                                                                    aaagGAATTCAAAGTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                           >  2:1116601‑M2/2‑34 (MQ=255)
                                                                                                                          agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                     <  1:233475‑M1/123‑1 (MQ=255)
                                                                                                                           ttCAAAATTGTTTTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                    >  2:405586‑M2/1‑27 (MQ=255)
                                                                                                                            taagctggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgg                   >  2:680113‑M1/19‑143 (MQ=255)
                                                                                                                             gaggtggccgcgtcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                  >  2:274335‑M1/18‑143 (MQ=255)
                                                                                                                             ccgaattgTTCTTTATCTTGTGCCGggtcatgactccatcttattgatggcgttttatgttcagatactgcccgatgactttgtcatgcagctccaccgattttgcgaacgactttgacctgcgtcccagccgtgccaggtgc                  >  2:752115‑M2/4‑25 (MQ=255)
                                                                                                                             cAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc                  >  1:181967‑M2/1‑25 (MQ=255)
                                                                                                                             aagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                  >  1:208264‑M1/18‑143 (MQ=255)
                                                                                                                                ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGggac               <  2:422227‑M1/129‑2 (MQ=255)
                                                                                                                                ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag               <  1:1300713‑M1/129‑1 (MQ=255)
                                                                                                                                ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag               <  1:1219361‑M1/129‑1 (MQ=255)
                                                                                                                                   tGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcctgattactttgtcatgcagatccaccgatattgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc            >  1:396663‑M2/1‑19 (MQ=255)
                                                                                                                                   gcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGata            <  2:69555‑M1/132‑2 (MQ=255)
                                                                                                                                      tCTTTATTTTGTGCCGggtaatgaccacatcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga         >  1:1282928‑M2/1‑16 (MQ=255)
                                                                                                                                      gcaccaccTTGTGACGCCCATGAGTATCGTGGCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc         >  1:915496‑M1/9‑143 (MQ=255)
                                                                                                                                       catcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTAATGTCGCAGTTTATGGGGGGAGTATCg        <  2:798418‑M1/136‑1 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt       <  1:895659‑M2/143‑130 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt       <  1:719633‑M2/143‑130 (MQ=255)
                                                                                                                                         ttATTCTGTGCCGggtaatgactcccacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgccttccgtcccagccgtgccaggtgctgcctcagattc      >  1:17539‑M2/1‑13 (MQ=255)
                                                                                                                                           aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag    >  2:358975‑M2/1‑11 (MQ=255)
                                                                                                                                             cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGattgtcgctggct  <  1:633284‑M1/142‑7 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.