Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 57 [0] [0] 54 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)50 (0.710) 45/264 0.5 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3816000
                                                                                                                                               |                                                                                                                                              
aaCACCTGCTTGCTAATCGCAAATCCACTACACCGGCGCTTTTATGGTTTCATGCCTTCGCTCCTCATCTTACTTCTCTACAGACAAAAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                <  2:366531‑M1/143‑1 (MQ=255)
aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTCTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                <  1:1065951‑M1/143‑1 (MQ=255)
   acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCCTATTCCTTTTATACAGACAAAAAAAAGGCGACTCATGAGTCGCCTTAGAAATCAGTTTGGCCGCGCCGCCTTCTGCcgt                                                                                                                                             >  1:398467‑M1/1‑140 (MQ=255)
   acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCAAGCCTTCGCTCCTCATCCTAGTATGTTGCAGGGGGGTCGGAGACGACACAGCAGGCGCCTTACAAACCCGTTTGCCAGCGCCGCGCTCTGccgc                                                                                                                                             >  2:1327468/1‑140 (MQ=255)
    ccTGCTTGCTAAGCGCAAATTCAATAAAATGGCGATGGTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            <  1:690180‑M1/143‑5 (MQ=255)
     cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccc                                                                                                                                           >  1:641927‑M1/1‑138 (MQ=255)
     cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGACATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                           >  2:853696‑M1/1‑138 (MQ=255)
      tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGACGCCTTCTGCcgtccc                                                                                                                                          >  1:658855‑M1/1‑137 (MQ=255)
        cttgctACGCGCAAATTCCATAAACTGGCGCTGATATGGTTCCATGCCTTCGCTCCTCATCTTACTTTTCTACCGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                        <  1:1094683‑M1/143‑9 (MQ=255)
        cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCCCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                        <  1:392863‑M1/143‑9 (MQ=255)
           ggtgagcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  1:1186138‑M1/139‑12 (MQ=255)
            ctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                    >  1:150439‑M1/1‑131 (MQ=255)
             tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGAATCATCTGACTCGGTAAAAAGCAGTTTGCCAGCGCCGCCTTCGGCcgtcacctgcact                                                                                                                                   >  1:624918‑M1/1‑130 (MQ=255)
               aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcgcttc                                                                                                                                 >  1:1052031‑M1/1‑128 (MQ=255)
                  gtaaattCCATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              <  2:412393‑M1/141‑19 (MQ=255)
                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgctcttcaa                                                                                                                               >  1:1007066‑M1/1‑126 (MQ=255)
                          aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTCAAAATCACTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaattatgcgct                                                                                                                      >  1:441002‑M1/1‑117 (MQ=255)
                          aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcc                                                                                                                      >  2:1059447‑M1/1‑117 (MQ=255)
                                  tgcgctTATATGGTTTCATGCCTGCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:1210521‑M1/142‑35 (MQ=255)
                                     gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcattgatccgcccgtcttcggtc                                                                                                           >  1:697742‑M1/1‑106 (MQ=255)
                                             ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCCCCTTACAAATCAGTTTGCCAGCGCCGCCCTCTGCcgtcccctgcacttgaatgatgcgcccgtcttcgctcctccctac                                                                                                   >  1:222026‑M1/1‑98 (MQ=255)
                                              gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                  >  2:97724‑M1/1‑97 (MQ=255)
                                               tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcggtcatcactacgc                                                                                                 >  2:910848‑M1/1‑96 (MQ=255)
                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             <  1:710584‑M1/143‑52 (MQ=255)
                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaagcggccgtcatcggtcatcactacgctcct                                                                                             >  2:333427‑M1/1‑92 (MQ=255)
                                                    tGCCTTCGCTCCTCATCTTACTTTTTTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  2:197030‑M1/143‑54 (MQ=255)
                                                     gCCTTCGCTCTTCATCTTACTTTTCTACAGATAACAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  2:1095720‑M1/143‑54 (MQ=255)
                                                      ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtgctcactacgttcatgtc                                                                                          >  1:1271238‑M1/1‑89 (MQ=255)
                                                        ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                        >  1:909362‑M1/1‑87 (MQ=255)
                                                                 cATCTGACTTTTCTACAGACAAAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                               <  1:67139‑M1/143‑66 (MQ=255)
                                                                     ttACTTTTGTAGAGGCAAAAAGAAGGCGACTCATCAGTCGGCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  2:1160450‑M1/143‑70 (MQ=255)
                                                                         ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatggcggtcgctccggccgcgtct                                                                       >  1:545718‑M1/1‑70 (MQ=255)
                                                                           ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc                                                                     <  1:904453‑M1/143‑76 (MQ=255)
                                                                              tACAGACAAAAAACGGGCGATGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCCTCTGCcgttccctccacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                  <  2:1104637‑M1/143‑79 (MQ=255)
                                                                                  gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgcgctccgcggcagagtcctcaaggtct                                                              >  2:1199980‑M1/1‑61 (MQ=255)
                                                                                   aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcggcagagtcctcaacgtctt                                                             >  2:449777‑M1/1‑60 (MQ=255)
                                                                                       aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  1:879909‑M1/143‑87 (MQ=255)
                                                                                          caaagGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  2:1078520‑M1/142‑90 (MQ=255)
                                                                                              ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgca                                                   >  2:380466‑M1/1‑50 (MQ=255)
                                                                                               gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcatcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaa                                                  >  2:610144‑M1/1‑49 (MQ=255)
                                                                                                cGACTCATCCTCCGCCTTATAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcacttcaatgatgcgcccctcttcggtcatcactacgttcatgtcggtctcttcggcagagtcttcaacgtattccagatcgcaaa                                                 <  2:922733‑M1/143‑96 (MQ=255)
                                                                                                              cattaaAATTCACTTTGCCAGCGCCGCCTTCTGCcgtcccctgcaccgcaacgatgcgcccgtcttcgttcatcactacgttcatgtcggtctctgcggcagagtctgcaacgtattccagatcgcaaaccgcttcgccgttc                                   <  1:8372‑M1/141‑110 (MQ=255)
                                                                                                                  aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa                               <  1:384421‑M1/143‑114 (MQ=255)
                                                                                                                    aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatgtcggtctctgcggcagaatcttaaacgtattccaaatcacaaaacggttcgcatttgacaatt                             >  1:129529‑M1/1‑28 (MQ=255)
                                                                                                                    aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatt                             <  2:1273562‑M1/143‑116 (MQ=255)
                                                                                                                        ctgttTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  1:146738‑M1/141‑120 (MQ=255)
                                                                                                                          gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttaatgccggtctctacggcagagtcttcaacgccttccagcgcgccaaccgcttcgcccttcaccattccgacc                       >  2:22589‑M1/1‑22 (MQ=255)
                                                                                                                           tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcgcccgtcttcggccatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagaccgcacaccgctccgcccctcacacgtcccacag                      >  2:838966‑M1/1‑21 (MQ=255)
                                                                                                                                 cgcgccGCCTTCTGCcgtcacctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaaaggattccagatcgcagaccgcttcgccgtttacaattccgacaggaactg                >  1:292019‑M1/2‑15 (MQ=255)
                                                                                                                                  gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc               <  1:1309531‑M1/143‑130 (MQ=255)
                                                                                                                                  gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggacatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttgacaattcagacagaaactgc               >  1:1072874‑M1/1‑14 (MQ=255)
                                                                                                                                   cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg              <  1:427205‑M1/143‑131 (MQ=255)
                                                                                                                                     ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc            >  1:3017‑M1/1‑11 (MQ=255)
                                                                                                                                          ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacca       >  1:92552‑M1/1‑6 (MQ=255)
                                                                                                                                              gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgaccatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctcccatccc   >  1:576869‑M1/1‑2 (MQ=255)
                                                                                                                                               ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctcccatccct  >  2:174854‑M1/1‑1 (MQ=255)
                                                                                                                                               ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  2:998015‑M1/1‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                              
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: