New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	47 (0.780)	11 (0.200)	11/252	4.6	20.2%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	45 (0.840)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209464‑1209744                                                                                                                                           |                                                                                                                                                aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCtt                                                                                                                                             <  1:1060956/143‑1 (MQ=255)   gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGACTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtct                                                                                                                                           >  1:554886/1‑143 (MQ=255)      atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTccc                                                                                                                                        >  2:609570/1‑143 (MQ=255)          gttggTCGGATAAGCCTTTGCGAGTTCCGGCTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGCCTTCTCCCAAAc                                                                                                                                    <  2:467738/139‑1 (MQ=255)             tGTCGGATAAGCCCTCGCCAGTTCCGGGTATTCTTCAGCAGAAACAGCCGCACCATTGCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaa                                                                                                                                 <  1:894946/143‑1 (MQ=255)              gTCGGATAAGTCTTTGCCAGTGCCGGGAACGCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                <  1:521165/143‑1 (MQ=255)              gTCGGATAAGCCTTTGCCCGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGCTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                <  2:462999/143‑1 (MQ=255)               tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCAACGCGTCACCAACAGGTAATGCAGAGCCTTCTcccaacccaagg                                                                                                                               >  2:772544/1‑141 (MQ=255)                cGGGTAAGCCTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATGTGAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                              <  2:126955/143‑1 (MQ=255)                    tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                          <  1:1011258/143‑1 (MQ=255)                     aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTACTCACAAACCAAAGtgtgtg                                                                                                                         >  2:644345/1‑138 (MQ=255)                       gCCTTTGCCAGTTCTGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                       <  2:196232/143‑6 (MQ=255)                       gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                       >  1:297793/1‑138 (MQ=255)                       gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                       >  1:290253/1‑143 (MQ=255)                       gCCTTTGCCAGTTCCGGGTAGTCCTCCGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                       <  2:222454/143‑1 (MQ=255)                             gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                 <  1:395051/143‑1 (MQ=255)                                  ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                            >  1:137795/1‑143 (MQ=255)                                     cGGGTATTCTTCAGCAGAAAAAGCGGCGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGAAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                         <  1:1026995/143‑1 (MQ=255)                                            tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                  >  2:189355/1‑143 (MQ=255)                                            tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTAGGCGGCGTAGCTGAACGCCACGGAACAGGGACAACAACAGGTAATACAGAGCACACACCGAAAACAACGGTCATCAAAAGGAAGAAATAaaaaaccac                                                                                                  >  2:769520/1‑138 (MQ=255)                                             cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCGAGACCAACGTTTATGAAAATGAAGAACTAACAAGAAAAt                                                                                                 >  1:187874/1‑143 (MQ=255)                                              ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCCAACCACCGTTTATGAAAATCAAGAACTACAAAGCAAAta                                                                                                >  2:363528/1‑142 (MQ=255)                                              ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAATCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                <  1:808731/143‑1 (MQ=255)                                                        aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTcc                                                                                     >  2:218223/1‑143 (MQ=255)                                                        aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGTAACTGGAGGCCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTcc                                                                                     >  1:1039275/1‑143 (MQ=255)                                                          aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTg                                                                                   <  2:799486/143‑1 (MQ=255)                                                                aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTa                                                                             >  1:222613/1‑143 (MQ=255)                                                                         tttCAGCCAGCGTGTTGGGCGAGCGGCTGAAGGCCACGGAACCGGGACACCAACATGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGa                                                                    <  2:1045175/143‑1 (MQ=255)                                                                            cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGAttg                                                                 >  1:141150/1‑142 (MQ=255)                                                                               ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                              <  2:481623/143‑1 (MQ=255)                                                                               ccagccTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                              <  1:160303/143‑1 (MQ=255)                                                                                 agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCGTTTACCAGGGGGATTTAACAt                                                            >  1:542381/1‑143 (MQ=255)                                                                                  gccTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCATATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                           <  2:663254/143‑1 (MQ=255)                                                                                     tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt                                                        >  2:892083/1‑143 (MQ=255)                                                                                                  gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGtcc                                           >  1:702996/1‑141 (MQ=255)                                                                                                   cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAACGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTAACCAGGGGGATTTAACATGATTATTGGCTATGTAcg                                          >  1:56543/1‑143 (MQ=255)                                                                                                    tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAAGAAATAACAGGCAAATG‑GCATCATTCCTGCTCTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                         >  1:235180/1‑143 (MQ=255)                                                                                                         gCCACGGAACCGGTACACCACCAGGTAATGCACAGCCTCCTCCCAAACCAACATCTATCGACCTG‑AGAAGAGAGCGGCCAATGAATATCAGATCTGCTTTTACCAGGGGGATTTAGCATGCTTATTGGCTATGTACGCGTATc                                    <  2:485763/143‑1 (MQ=255)                                                                                                         gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCCTCTCCCAAACCAACGTATATGAAAACGAAGAAACAACAAGCAAATG‑GCATCACTCCTGCTTTTACCAGGGGGCTCGAACAGGGCCATTGGCTCTGTGCTCGTATc                                    >  2:917160/1‑143 (MQ=255)                                                                                                           cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTCATTGGCTATGTACGCGTATcaa                                  >  2:140811/1‑143 (MQ=255)                                                                                                            aCGTAACCGGGAGACCACCAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                 <  1:180736/143‑1 (MQ=255)                                                                                                                aaCCGGGGCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAGATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                             <  2:700317/143‑1 (MQ=255)                                                                                                                aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACCAAt                             >  2:837018/1‑143 (MQ=255)                                                                                                                  ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                           >  1:416374/1‑143 (MQ=255)                                                                                                                    gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATG‑GCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAAGCGTAGCAACAAAtcagc                         >  2:869859/1‑139 (MQ=255)                                                                                                                     tgACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                        <  2:301764/142‑1 (MQ=255)                                                                                                                           cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                  >  1:446386/1‑143 (MQ=255)                                                                                                                            aaaatgTAATGACGACCATTCCCCCAAACCTACGTTTATGACAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCACGTGGATTTAACATGCTTATTGGCTATCTACGCGTATCAACAAATGACCAGAAcaca                 <  2:150276/138‑1 (MQ=255)                                                                                                                                    aTGCAGAGCCTGCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa         <  2:936800/143‑1 (MQ=255)                                                                                                                                     tggagagCCTTCTCCCAAACCAGCGTTTATGAAAATGAAGGAAGAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa        <  2:66967/140‑1 (MQ=255)                                                                                                                                        agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACCACGt     >  1:762225/1‑143 (MQ=255)                                                                                                                                        agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCATTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAACAGAACACAGATCtcacacgt     >  2:896263/1‑136 (MQ=255)                                                                                                                                           gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt  <  2:222613/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209464‑1209744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.