New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3941883	NA (NA)	7 (0.120)	5/280	8.0	29.5%	noncoding (76/1542 nt)	rrsC	16S ribosomal RNA of rrnC operon
	?	NC_000913	= 4208238	17 (0.280)					noncoding (92/1542 nt)	rrsE	16S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

AGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGG  >  NC_000913/4208096‑4208259                                                                                                                                               |                      agTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGcttctt                       <  2:31681/143‑1 (MQ=32)  gTGAACACGTTATTCATTACGAAGTTTAATTCTTTGAGCATAAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGCACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCttt                      <  2:886591/143‑1 (MQ=12)  gTGAACACGTAATGCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCttt                      <  1:718347/143‑1 (MQ=17)     aaCACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCt                   <  1:193338/143‑1 (MQ=32)       cacGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGa                 >  1:496743/1‑143 (MQ=32)        acGTAATTCATTACGACGTTTAATAGTGTGCTGATCAAACTTCTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGAc                <  1:454329/143‑1 (MQ=11)        acGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCGTGCCTCTTTGCTGAc                >  2:533270/1‑143 (MQ=17)            aaTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAGGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGt            >  1:513485/1‑143 (MQ=17)            aaTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGt            <  1:628506/143‑1 (MQ=32)             aTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCCTGCTTCTTTGCTGACGCGTg           >  1:382892/1‑143 (MQ=17)              ttCATTACGAAGGTTCATTCTTTGGGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAATTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTgg          <  2:310745/143‑1 (MQ=255)               tCATTGCGAAGTTTAGTTCTTTGAGCAGCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGTGTCAGGCCTAACGCATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  2:487014/143‑1 (MQ=11)               tCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  1:479091/143‑1 (MQ=32)               tCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  1:480287/143‑1 (MQ=32)                  ttACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGACGCTTGCTTCTTAGCTGACGAGTGGCGGa      >  2:1090363/1‑143 (MQ=17)                   tACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGAc     >  1:556275/1‑143 (MQ=32)                     cGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACgg   <  2:405683/143‑1 (MQ=31)                      gAAGTTTGATTCTTAGAGCATCACGCGGGTAAAGTGAAGAGTTTGATAATGGCCCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACggg  <  2:221213/143‑1 (MQ=11)                                                                                                                                               |                      AGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGG  >  NC_000913/4208096‑4208259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.