New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 314414	47 (1.090)	3 (0.070)	3/276	6.4	5.7%	pseudogene (58/872 nt)	eaeH	pseudogene, attaching and effacing protein homology;factor; Not classified
	?	NC_000913	= 314426	53 (1.260)					pseudogene (70/872 nt)	eaeH	pseudogene, attaching and effacing protein homology;factor; Not classified
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTGGAGAAA  >  NC_000913/314292‑314566                                                                                                                                       |                                                                                                                                             tctagttgACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAat                                                                                                                                      <  1:481500/136‑1 (MQ=255)   aaGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAatat                                                                                                                                    >  1:555476/1‑143 (MQ=255)       aGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATctct                                                                                                                                <  2:428335/143‑1 (MQ=255)       aGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATctct                                                                                                                                <  1:144504/143‑1 (MQ=255)             catcatTTGTGTCTGCCTAGGTGCGTTACTTCGTTCATCAGGAAATTACCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAg                                                                                                                          <  1:228208/143‑1 (MQ=255)             cATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAAGAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAg                                                                                                                          >  1:397411/1‑143 (MQ=255)             cATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAg                                                                                                                          >  1:31230/1‑143 (MQ=255)             cATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCGCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAg                                                                                                                          <  2:346766/143‑1 (MQ=255)              attattTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAgg                                                                                                                         <  2:537859/143‑1 (MQ=255)                 attTGTGTCTGCCTATGTTCGTTAATTCGTTGAGCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTc                                                                                                                      <  2:308378/143‑1 (MQ=255)                     gtgtCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCtttt                                                                                                                  <  2:64666/143‑1 (MQ=255)                     gtgtCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCtttt                                                                                                                  <  1:713666/143‑1 (MQ=255)                     gtgcCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCtttt                                                                                                                  <  1:23477/143‑1 (MQ=255)                        tCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTcc                                                                                                               >  1:232053/1‑143 (MQ=255)                          tGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCCCTGCGTCGCGTGGGCAACTACCTCTGTTCAGGTTCTTTTTccgc                                                                                                             >  1:651585/1‑141 (MQ=255)                             cTATGGTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCg                                                                                                          <  1:231529/143‑1 (MQ=255)                              tATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACCACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGc                                                                                                         <  2:625812/143‑1 (MQ=255)                              caTGTTCGTTCATTCGGTCATCAGGAAATTACCTCAATGTCACATTATAACACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCTCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTAGc                                                                                                         <  2:751341/142‑1 (MQ=255)                                   tCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCa                                                                                                    <  1:635377/143‑1 (MQ=255)                                      ttAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCAAGGCATGGGCGAGTGTCTGTGTACAGGTTTTTTTTCCACTGGgtgtgagct                                                                                                 >  1:175855/1‑138 (MQ=255)                                             gTTCATCAGGAAATTATCTCATTGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTAcccc                                                                                          <  2:509816/143‑1 (MQ=255)                                             gTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTAcccc                                                                                          <  2:616211/143‑1 (MQ=255)                                              ttCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCa                                                                                         <  1:464070/143‑1 (MQ=255)                                                  tcaGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTaa                                                                                     >  1:784162/1‑143 (MQ=255)                                                    aGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTACTg                                                                                   >  1:128625/1‑143 (MQ=255)                                                     ggAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATgg                                                                                  <  2:175764/143‑1 (MQ=255)                                                         ctcaTCTCAATCTCCCATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATggcggc                                                                              <  2:682818/140‑1 (MQ=255)                                                             tctcAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGt                                                                          <  1:688632/143‑1 (MQ=255)                                                               tcAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGAAAACGCGGCGCGTgc                                                                        >  1:485176/1‑143 (MQ=255)                                                                cAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTCGCGTGGGCAAATATCTATGTTCAGGTTCTTTTTCCACTAGCTGTCACCATTACCCAAGCAATGGCGGCACGTccg                                                                       >  2:225324/1‑143 (MQ=255)                                                                       acaTTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTCCGCCAGTGATGGCGGCACGCGcgccgcccc                                                                >  1:248708/1‑140 (MQ=255)                                                                          ctataAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCgg                                                             <  1:677001/142‑1 (MQ=255)                                                                                  cAGGTCATAAACAACCAGGATTTCGTTATTCGGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCa                                                     <  1:600615/143‑1 (MQ=255)                                                                                     gTCAGAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTGCTTTTTCCACTCGCTGTGACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACgg                                                  <  2:149337/143‑1 (MQ=255)                                                                                      tCATAAACAACCACGGTTTCGTTATTCAGTTCTGGCCCGCGGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGt                                                 >  1:481131/1‑143 (MQ=255)                                                                                        aTAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCACCCACGGTTg                                               >  1:445640/1‑143 (MQ=255)                                                                                          aaaCAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCCCCTTTACCCCAGTAATGGCGGCACGTGGGCAGCGTCCGGGTCAGCCACGGGTGat                                             >  1:104367/1‑142 (MQ=255)                                                                                              atcgaCGAGTTCGGTATTCATTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATg                                         <  2:669468/139‑1 (MQ=255)                                                                                                   cGATTTCGTTATTCAGTTCTGGCCCGCGGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCGCGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGaaa                                    <  2:79281/143‑1 (MQ=255)                                                                                                        tCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTACTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAAtacta                               <  1:31365/143‑1 (MQ=255)                                                                                                            tATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGt                           >  1:353932/1‑143 (MQ=255)                                                                                                               tCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAAc                        >  1:547905/1‑143 (MQ=255)                                                                                                                   ttCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAActgct                    >  1:622812/1‑143 (MQ=255)                                                                                                                         cccGCTGCGTGGCGTGGGCAAATATCTCTGTTCGGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGGACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGataat              <  2:159110/143‑1 (MQ=255)                                                                                                                         cccGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGCTGAGCATGGGAACTACTACGGTGACTGCTGatagt              >  1:111453/1‑141 (MQ=255)                                                                                                                          ccGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGCAATACTACGGCAACTGCTGatacga             >  2:109349/1‑140 (MQ=255)                                                                                                                           cGCTGCGTGGCGGGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAACTACTACGGTCACTGCTGatcctaa            >  1:469285/1‑138 (MQ=255)                                                                                                                            gCTGCGTGGCGTGTGCATAGATCGCTTTTCAGGTTCTTTTTCCACTCGGTGTCACCGTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGATGATAATAAc           <  2:202274/143‑1 (MQ=255)                                                                                                                               gcttggcgtggGCTAATCCATCTGTTCCGGTTCTTTTTGCGCTCGCTGTCACCCTTCCCACAGTAATGGCGGCACGTGCGCTGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTg        <  2:385905/140‑1 (MQ=255)                                                                                                                               gcgtggcgtgGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTg        <  2:784162/143‑1 (MQ=255)                                                                                                                               gcgtggcgtgCTCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTg        <  2:580635/143‑1 (MQ=255)                                                                                                                                   ggcgtggGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTGgaca    >  1:650767/1‑141 (MQ=255)                                                                                                                                     cgtggGCAAATATCTCTGTCCCGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCGGCAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTGGAGaaa  <  1:112702/143‑1 (MQ=255)                                                                                                                                       |                                                                                                                                             ACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCTCAATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGTGGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGCGCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTGGAGAAA  >  NC_000913/314292‑314566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.