New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	954845 =	48 (1.110)	3 (0.070)	3/270	6.3	6.3%	intergenic (‑379/+27)	focA/ycaO	formate channel/ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_000913	954864 =	44 (1.070)					intergenic (‑398/+8)	focA/ycaO	formate channel/ribosomal protein S12 methylthiotransferase accessory factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTAAAACGCCGCTTCGC  >  NC_000913/954723‑954996                                                                                                                                              |                                                                                                                                     gTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCCTTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATCACGCCTACACTGCGAAGGCTAt                                                                                                                                     >  1:631080/1‑143 (MQ=255)   atttattAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTTCGTAGGCTAttt                                                                                                                                   >  2:487130/1‑143 (MQ=255)         taAATACAAATTACCGATATTTAACCTTGTAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGAGTAAGCTACTCGatttt                                                                                                                             >  2:769232/1‑143 (MQ=255)         taAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAttt                                                                                                                                   >  2:605400/1‑137 (MQ=255)         taAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAttt                                                                                                                                   <  1:605400/137‑1 (MQ=255)         taAAGACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGTGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGacttt                                                                                                                             <  2:319453/143‑1 (MQ=255)         aaaaTACAAAATAGCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGatttt                                                                                                                             <  1:580463/142‑1 (MQ=255)              aCAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGattttatttt                                                                                                                        >  1:55647/1‑143 (MQ=255)                  aTTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAACTATTTGTAATGCGGGGCAGTAAAAAAACGCACCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGccc                                                                                                                    >  1:30315/1‑143 (MQ=255)                   ttACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCa                                                                                                                   >  1:77945/1‑143 (MQ=255)                                aCCTTATAATTACAATGATTTTATTAATTCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGTCTTATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTg                                                                                                      <  2:11204/143‑1 (MQ=255)                                       aaTTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTTGCGCGCt                                                                                               >  1:710301/1‑143 (MQ=255)                                         ttACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCAGCAGAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGc                                                                                             <  1:106131/143‑1 (MQ=255)                                             aaTTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTTACCAGAATGCTGATTTGGCTGACTGCAGCt                                                                                         >  1:201812/1‑143 (MQ=255)                                               ttattttattAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGACTGCTGCTTTGTCGCGCTGCAGCttt                                                                                       >  2:624414/1‑143 (MQ=255)                                                    ttattaATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGTTGCTTTGGCGCGCTGCAGCTTTTCGTa                                                                                  <  2:359645/143‑1 (MQ=255)                                                     tattaATGCAAATATATGTAAAGCGGGGCAGTAGAAAAACGCCCCGTAATATAACTCAGACTAAACATGAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAg                                                                                 <  1:449368/143‑1 (MQ=255)                                                           tGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTc                                                                           <  2:426664/143‑1 (MQ=255)                                                              aaaTATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATAGAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTGATGGTAGGCCTTcaac                                                                        >  2:682679/1‑143 (MQ=255)                                                                     tGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACt                                                                 <  1:336695/143‑1 (MQ=255)                                                                     tGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACt                                                                 >  1:764909/1‑143 (MQ=255)                                                                       gaaaGCGGGGCATTAAAACAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATGTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGa                                                               <  2:747285/142‑1 (MQ=255)                                                                        aaaGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCCTAGACCTTCAACCACGGCTGAt                                                              >  2:763135/1‑143 (MQ=255)                                                                          aGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATATGATTTTGTTTTGCCCAGAATGCTGCGTTGGCGCGCTGCAGCTTTGCGTAGGCCTACGACAACGACTGAtgg                                                            >  1:301210/1‑142 (MQ=255)                                                                           gCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCGACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGAtgtg                                                           <  1:132089/143‑1 (MQ=255)                                                                            cGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTgc                                                          <  2:620086/143‑1 (MQ=255)                                                                                gCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAGTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTgcagca                                                      >  1:704681/1‑143 (MQ=255)                                                                                   ttAAAAAAACGCCCCGTAATATAACTGAGACTAATCATTAAACCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCCAAc                                                   >  2:687073/1‑143 (MQ=255)                                                                                   ttAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAAc                                                   >  1:601471/1‑143 (MQ=255)                                                                                       aaaaaCGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCTTAGGGCGTCAACAGCGACTGATGTGCAGCAAACGCGt                                               >  1:26649/1‑143 (MQ=255)                                                                                           aCGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATCTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAg                                           <  2:59695/143‑1 (MQ=255)                                                                                              ccccGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATc                                        >  1:107876/1‑143 (MQ=255)                                                                                               cctctAATATTACTCAGACTACTCATCAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCg                                       <  2:543311/139‑1 (MQ=255)                                                                                                    aaTATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGTGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATc                                  <  1:119886/143‑1 (MQ=255)                                                                                                    aaTATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATc                                  <  1:647291/143‑1 (MQ=255)                                                                                                         aaCTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCg                             <  1:622444/143‑1 (MQ=255)                                                                                                           cTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGt                           >  1:382769/1‑143 (MQ=255)                                                                                                                  tAATCATTAAGCCTACATTGGGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGAAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGc                    <  2:379620/143‑1 (MQ=255)                                                                                                                  tAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACTACGACTGATGTGCAGCAAACGCGTGCAGGTCGCTATCTACCGGTTGCAGGc                    >  2:521255/1‑143 (MQ=255)                                                                                                                  tAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCATAGGCCTTCAACAACGACTCATGTGCAGCAAACACGTGCCCACCCCTACCCACCGCTCGCAGGc                    >  1:648918/1‑143 (MQ=255)                                                                                                                       aTTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTCGGCCTTCAACAACGCCTGCTGTGCAGCAAACGCCTGCAGATCGCTATCTACCGGGTGCGCGCCGTaa               >  2:707639/1‑143 (MQ=255)                                                                                                                         tAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACCACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTaaaa             <  2:153319/143‑1 (MQ=255)                                                                                                                               tACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGGAAAAcgccgc       >  1:437384/1‑143 (MQ=255)                                                                                                                                    tGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTAAAACGCCGCTTcgc  <  1:540866/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                     GTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTAAAACGCCGCTTCGC  >  NC_000913/954723‑954996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.