| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2600973 | 44 (1.020) | 4 (0.100) | 4/270 | 5.7 | 8.0% | intergenic (+25/‑228) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit |
| ? | NC_000913 | = 2600983 | 50 (1.220) | intergenic (+35/‑218) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAAT > NC_000913/2600844‑2601125 | aGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCGGTGCTGGCGGCGCTTGCGGcc > 1:56952/1‑143 (MQ=255) cTTCCTGATTGACGCTGATGCCAAAACCGAACATGTCTTTGACGACTTC‑ACAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTCCTGGCTGCGCTTGCGGCCAg < 1:54018/143‑1 (MQ=255) ccTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCAt > 1:459333/1‑143 (MQ=255) ccTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTCGCTCCGCTTCCGACCAGCAt > 2:228772/1‑143 (MQ=255) gCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTAGCTGCGCATACGGCCAACATACCTA‑ACTtc > 1:327607/1‑143 (MQ=255) tGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATAGCTC‑ACTtct > 2:324084/1‑143 (MQ=255) tGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCGGGCTGCGCTTGCGGCCAGCATACCTC‑ACTgctc > 2:395964/1‑143 (MQ=255) gATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCg < 1:617365/143‑1 (MQ=255) tGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑g > 2:12887/1‑143 (MQ=255) ggCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCCGCATACCCC‑CCTTCTCCT‑Ga > 2:212051/1‑143 (MQ=255) ccTTTGACGATTTA‑TAGACGATCACTCGCGTCGACGTTGTGCGGAACTGGCTGATAGAACTCGCCTGATTACTTTCCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ATTTCTTGT‑GATCAAGATCACATtctc < 2:643078/142‑1 (MQ=255) aCGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAACCTCAAAGTCCCGCCTTc > 2:505043/1‑143 (MQ=255) ggtgtC‑AAAACCAGCAATCACCACGGCGTTGTGCTGAACTGGCTGAAAGACCCCGCCTGCTTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTccc < 1:381472/139‑1 (MQ=255) gATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTccc > 1:709014/1‑143 (MQ=255) gATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACAATCTCGCTTTccc > 2:633386/1‑143 (MQ=255) ttgtaaaCGAGTAAGCACCACGAGGTGTTGGTGGACGGGCTGACACAACACGCCTGATTACTTTGCTCCAGTGCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTg < 1:66014/139‑1 (MQ=255) tC‑AAAACGAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGACTCCTTTGCTTCATTCCGTGCTGGCTGCGCTTGCGACCAGCCTACCTC‑ACTTCTCGT‑GATCAAGATCCCATGCTCGCTTTCCCCTGc > 2:721618/1‑143 (MQ=255) aaaaCCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGC‑GATCAAGATCACCTTCTCGCTTTCCCCTCCgc > 1:100452/1‑142 (MQ=255) aaCCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCACGATCACATTCTCGCCTTCCCCTTCGcca > 1:758246/1‑143 (MQ=255) aaCCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGgca > 1:461759/1‑143 (MQ=255) cAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTACATTCAATGGGAGCTTTTCTTGCGGCCAGCATGCATC‑GCAAC‑CGTCAATCAGGATCATGTTGTCATTTTCCCCTGCGACACgg > 1:775396/1‑143 (MQ=255) ccacGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACCTCTCAA‑ACTAAACATGACGTGCTCGCTTTCCCCTTCGACACGGGGGCCGAAt > 2:162506/1‑143 (MQ=255) gTTGTGCTGAACTGGCGGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑CCTTCTCGT‑GATCAAGATCACATTATCGATTTCCCATGCGACACGGGTGTCGAATCCAtttt < 2:279465/143‑1 (MQ=255) tgtgCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCAtttttt < 1:712671/143‑1 (MQ=255) gtgCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTg < 1:231113/143‑1 (MQ=255) tgCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAACCCATTTTTCGc > 2:171393/1‑143 (MQ=255) gCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCGGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACAGGGGTGTAGACTCGAttgtgagct > 1:667203/1‑136 (MQ=255) gacgggCTGAGAGAACACGCCTTCTTACTTTGCTCCATCCGGTGGTGGCTGCGCTTGCTGCCAGCATACCTC‑ATTTCTCGT‑GACCAAGATCACATTCTCGCTTTCTCCTGCGACACGTGTGTCGAATCCATTTTTTGCTGAAc < 2:85070/139‑1 (MQ=255) aaCTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGCAc > 2:669721/1‑143 (MQ=255) tGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATg > 2:403126/1‑143 (MQ=255) gAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCCGCATACCACAACGTTTCAT‑‑CTTACTGTGTGGTTCTCGCTTGCCCCTACGACACGGATGGCGAATCCATTTTTTGCTGAACGTTAATGACcat < 1:783240/143‑1 (MQ=255) aaCACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCCAGATCACAGTCCCGCTACCAACAGCGACACGCGTGTCGCATCCATCTTCTGCTGCACGTTAATAACcctc > 2:589007/1‑143 (MQ=255) acGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCAtt > 1:477109/1‑143 (MQ=255) gcttACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGCATCCATCTTTTGCTGAACGTTAATGACCATCATTTTTGTa < 2:520121/141‑1 (MQ=255) tACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACCCGGGTGTCGAATCCATTTTATGTTGAACGTTGATGACCATCCTCTTTGtcacg > 2:759011/1‑139 (MQ=255) tttGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTGGT‑GATCAAGCTCCCATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACCTTAATGACCATCATTCTTGTACCGTTc > 1:244734/1‑143 (MQ=255) tttGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTCTCCCCTCCAACCAAGCTACTCATGCCATTTTTTGCTGAACGTTAATGACCACCACTTTTGTACCCTTc > 2:164627/1‑143 (MQ=255) tttGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATAACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTc > 1:480854/1‑143 (MQ=255) ttGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCa < 1:454155/143‑1 (MQ=255) atgccGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTCTTGTCCCGTTGAGGATCCa > 2:753454/4‑143 (MQ=255) ccGTGCTGGCGGCGCTTGCGGCCAGCATCCCCC‑TCTTCTCGT‑GCTCAAGATCACATTCTCCGTTTCCCCTGCGACACGTGTGTCGATTCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGtt < 2:60482/143‑1 (MQ=255) tctagcagcgcTTGCGGCCAGCACAACTC‑ACTACTCGA‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATa < 1:118147/136‑1 (MQ=255) ctgCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGACCGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATaa > 2:495920/1‑143 (MQ=255) tgCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAAc > 1:543458/1‑143 (MQ=255) ttGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGCCACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTCTCGTACCGTTCAGAATCCAGTTAGTACATAACTTAtt > 2:731114/1‑143 (MQ=255) ttGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGCGTCGCGTCCATTTTTTGCTGAACGTTCATGACCATCATTTTTGTACCATTCATAATCCAGTTAATACATAACTCAtt > 2:774366/1‑143 (MQ=255) gtGCGGCCAGCATACCTC‑ACAGCGCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTAtt < 1:600790/142‑1 (MQ=255) cGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGCACGTTAATGACCATCCTGTTTGTACCGTTCAGAATCCAGTTCATACATAACTTATTGaa > 2:683311/1‑143 (MQ=255) ggCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTa > 2:32406/1‑107 (MQ=255) ggCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTa < 1:32406/107‑1 (MQ=255) ggCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAat > 1:140505/1‑143 (MQ=255) ggCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCGGCGACACGGGTGTCGAATCCATACTTTGCTGAACGTTAATGACCATCATCTTTGTACCGTTCAGAATCCAGTTAATAGATAACTTATTGAat > 2:131764/1‑143 (MQ=255) | AGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTC‑AAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTC‑ACTTCTCGT‑GATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAAT > NC_000913/2600844‑2601125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |