| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,527,658 | Δ5 bp | coding (1190‑1194/2136 nt) | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3527658 | 3527662 | 5 | 26 [0] | [0] 26 | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3527657 | 0 (0.000) | 26 (0.600) | 23/284 | 1.0 | 100% | coding (1189/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | 3527663 = | 0 (0.000) | coding (1195/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
GTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAC > NC_000913/3527530‑3527795 | atgctgttattctggatcccgctggatatgccgctgaaattcactctctcatggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcggggaggcgatacattgcAGCGGTACgg > 1:540663‑M2/134‑143 (MQ=255) tgttattctggatcccgctggatatgccgctgaaattcactctctcatggatgtaaggcgcgcagaccattgaagccaccagcgtaaaacaaatggctgacgctagcgtgcggataggcgatacattgcAGCAGTACGGGAAt > 1:621881‑M2/130‑143 (MQ=255) ttttcgatcccgatggatctcatcctgaaattccctctctcatgcatgaaaggcgcgcagaccattgaacccaccagcgtaaaacaactgcctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTa < 1:39885‑M2/19‑1 (MQ=255) tctggatcccgctggatatgccgctgaaattcactctctcatggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTaa < 2:366379‑M2/20‑1 (MQ=255) cggatcccgctggatatgccgctgaaattcactctctcatggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAata < 1:247293‑M2/22‑1 (MQ=255) ctggatatgccgctgaaattcactctctcatgggtgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcggtacattgcAGCGGTACGGGAATGTGGAATATtcgaagtg > 2:31976‑M2/113‑140 (MQ=255) attcactctctcatggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgacacatcgcAGCGGTGCGGGAAGGTGTAATATTCCGACTTCCGGGACCTGGGGggcg > 2:396494‑M2/96‑143 (MQ=255) tggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCAc < 1:611258‑M2/61‑1 (MQ=255) ggatgaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCAcc < 1:341578‑M2/62‑1 (MQ=255) gaaaggcgcgtagatctttgaagttatcagagttaaacaactggctgacgtgggcgtgtgggtaggcgatacattgcAGCGGTAAGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCtttt < 2:405608‑M2/66‑1 (MQ=255) gaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCGATTCACCtttt > 1:15808‑M2/78‑143 (MQ=255) gaaaggcgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCtttt > 1:461636‑M2/78‑143 (MQ=255) gcgcgcagaccattgaaggcaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTAcc < 2:508764‑M2/71‑1 (MQ=255) cgcgcagaccattgaagccaccagcgtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCg < 1:61305‑M2/72‑1 (MQ=255) gcagaccagtgaagccaccagcgtaaaacacctggcggacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGttt < 2:461636‑M2/75‑1 (MQ=255) agaccagtgaagcccccagcgtaagacaacgggcggacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGa < 2:668557‑M2/77‑1 (MQ=255) gcccccagcgtacaacaactggctgccgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGa < 2:597503‑M2/88‑1 (MQ=255) tgccggcgtaaaccaactggctgacgcgggcgtgcgggtaggcgatacgttgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAACACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGatc < 2:33250‑M2/90‑1 (MQ=255) cagcagcgtaacataacgggctgccgctggcgtgcgggtaggcgataccttgcAGTGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAACACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGatc < 2:275380‑M2/90‑1 (MQ=255) gtaaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATCCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGa > 2:267919‑M2/47‑143 (MQ=255) taaaacaactggctgacgctggcgtgcgggtaggcgatacattgcAGCGGTACGGGAATGTGTAATGTTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCCGATAATCAGGaa > 2:232177‑M2/46‑143 (MQ=255) gctggcgtgcgggtaggcgatacactgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGc < 1:268506‑M2/115‑1 (MQ=255) gggtaggcgctacattgcAGCGGTACGGGTATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGGTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGa < 2:606611‑M2/125‑1 (MQ=255) taggcgatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGACCATCTGGAACGACGCCCGCTCATTGCCATTCCCAGAATc > 2:373381‑M2/16‑143 (MQ=255) gatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCTTTGCGTTTGCCAGaatctacac > 1:322812‑M2/11‑139 (MQ=255) gatacattgcAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAc > 1:414337‑M2/11‑143 (MQ=255) | GTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAC > NC_000913/3527530‑3527795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |