New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3638588 =	18 (0.730)	3 (0.120)	3/500	2.2	12.3%	coding (947/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
	?	NC_000913	3638811 =	25 (1.030)					coding (1170/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
Rejected: Frequency below/above cutoff threshold.

CTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTT  >  NC_000913/3638584‑3639084                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  cTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGACTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTAGCGCTGGCGTCAGGTCACGGTAAGATGATTGGCTGGCGCAGTGGGGc                                                                                                                                                                                                                                    >  1:45603/1‑275 (MQ=255)                    tGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCCTGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGaaa                                                                                                                                                                                                                 >  1:67310/1‑275 (MQ=255)                    cacaccggtgcatactcgatggtgctaagcatgtcggacttcagtttcttcaacaggcgctgatcgtcagcactcacgccaggcatcttcaccactttgtcgatagtgtcagaaacgcacagcataatgcggcgcatctggctacgttgatcaagcgacagcttgtcgtagctttccacatcggtggtcaacatacctttcaggcggtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGaa                                                                                                                                                                                                                  >  1:7438‑M2/209‑274 (MQ=255)                         accaccGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCgg                                                                                                                                                                                                            <  2:192813/275‑1 (MQ=255)                                aTGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTc                                                                                                                                                                                                                                                                                   >  2:92436/1‑197 (MQ=255)                                    ggAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCgcgc                                                                                                                                                                                                                                                                               <  1:92437/197‑1 (MQ=255)                                        aGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCCGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGTAAATTGGTCAGAAAGGCATGAc                                                                                                                                                                                             >  1:77134/1‑275 (MQ=255)                                                              aTCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGACAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGcc                                                                                                                                                                       >  1:85302/1‑275 (MQ=255)                                                                 ttcttcaacaggcgctgatcgtcagcactcacgccaggcatcttcaccactttgtcgatagtgtcagaaacgcacagcataatgcggcgcatctggctacgttgatcaagcgacagcttgtcgtagctttccacatcggtggtcaacatacctttcaggcggtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAg                                                                                                                                                                    <  2:7438‑M2/112‑1 (MQ=255)                                                                        ccagagtgtcggcATTATGCTGTGCGTTTCTGACACGATCGACAAAGTGGTGAAGAGGCCGGACGGTAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTGAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGGGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGAcgg                                                                                                                                                             <  2:77133/264‑1 (MQ=255)                                                                                 ccgcATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCCGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGACgtgt                                                                                                                                                    >  2:30599/1‑275 (MQ=255)                                                                                                                                     aacgcacagcataatgcggcgcatctggctacgttgatcaagcgacagcttgtcgtagctttccacatcggtggtcaacatacctttcaggcggtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGACGGTTTCCACTACTCACGTAc                                                                                                 >  1:137546‑M2/96‑274 (MQ=255)                                                                                                                                           aGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCCGTTTCCACTACTCACGTACTctcctc                                                                                          >  2:12444/1‑275 (MQ=255)                                                                                                                                                             cTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCCTGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGa                                                                         <  1:178389/274‑1 (MQ=255)                                                                                                                                                             cTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGa                                                                         <  2:85301/274‑1 (MQ=255)                                                                                                                                                                                     aggCTTAGCACCATCGAGTATGCACGGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGGATCGGTACGAGGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTa                                                  <  2:45474/271‑1 (MQ=255)                                                                                                                                                                                                  tCGAGTATGCACCGGTGGGGAGCATCATGGCGGGCGCGCTGGCGGTAGGTAGCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGGCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCGTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGt                                    <  1:30599/274‑1 (MQ=255)                                                                                                                                                                                                            aCCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGAAGGGGGTAGTTGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTc                         >  2:72366/1‑275 (MQ=255)                                                                                                                                                                                                              cGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGAtggtg                                                          <  2:160492/240‑1 (MQ=255)                                                                                                                                                                                                               ggTGTGGATCATCATGGCGGGCGCGCTGGCGTTAGGTAGCGGTACGATGATTGGCTGGAGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGa                      <  2:45603/275‑1 (MQ=255)                                                                                                                                                                                                                gtgtGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCGCCTCTTCTGTCGCGGGGACGATGGTGGGAGATGGTGGCGGGTTACAGCGTACAACCGTGACCCGCCTTCTgc                      >  2:172750/1‑273 (MQ=255)                                                                                                                                                                                                                gtgtGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTAAGCTAAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCTGGATGCCGGTTTCCAATACTCACGTACTCTCCTCTTCTGTCGTGGGGACGATGTGGGTCGATGGTGGCGGCATACAGGGTAAAACCGTGACAAGCCTTCTgc                      >  1:44311/1‑273 (MQ=255)                                                                                                                                                                                                                      tccagctgggcggtGGGGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCt                <  1:72367‑M2/260‑1 (MQ=255)                                                                                                                                                                                                                        catcatGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCg                                     >  1:23783/1‑251 (MQ=255)                                                                                                                                                                                                                          tcatGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAACATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTCCCGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGgtg           >  1:48993/1‑275 (MQ=255)                                                                                                                                                                                                                           catGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTg                                                                                                                                                                                                                      >  2:113434/1‑71 (MQ=255)                                                                                                                                                                                                                           catGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCCGATGACGGCGGCAGTGTCTATCGTCCTGGCGAGTTATACCGGGATGCCGGTTTCCCTTACTCACGTACTCCCCCCTTCTGTCGCGGGGGCGATGGGGGTAGTTGGGGGCGGGTTACAGCGTAAAACCTTGCCCACCATTCTCGTGGCCTggggct          >  2:154878/1‑272 (MQ=255)                                                                                                                                                                                                                            atGGCGGTGGGGCTGGCGTTGGGTATCGGTAGGATGATTGACTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGGTGtt         <  2:121099/275‑1 (MQ=255)                                                                                                                                                                                                                            atGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGAc                                 <  2:23783/251‑1 (MQ=255)                                                                                                                                                                                                                               gcggtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGaa                                                                                                                                                                                                                  <  1:113435‑M2/66‑1 (MQ=255)                                                                                                                                                                                                                                cggtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCg                                     >  1:134046‑M2/5‑243 (MQ=255)                                                                                                                                                                                                                                  gtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCTGGACCAGCATTCTGCTGGCCTGGGTGTTTAcc     >  2:156895‑M2/3‑273 (MQ=255)                                                                                                                                                                                                                                  gtCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCCCCTCTTCTGGCGCGGGGACGATGGTGGTAGATGGGTGCGGCTTACAGCGTAAAACCGTGACCATCATTCTGATGGCCTGGGTGTTTTcc     >  1:6977‑M2/3‑273 (MQ=255)                                                                                                                                                                                                                                    cgcgCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGCGTTATACCGGGATGCCGGTTTCCACTACTCCCGTACTCTCCCCTTCTGTCGCGGGGACGATGGTGGTAGATGGTTGCGGCTTACAGCGGAAAACCGTGACCCGCCTTCTGATGTCCTGGGGGTTTGCCCtt  >  2:175773/1‑274 (MQ=255)                                                                                                                                                                                                                                    cgcgCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGAc                                 <  2:134045/243‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  CTCAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGATGCGCCGCATTATGCTGTGCGTTTCTGACACTATCGACAAAGTGGTGAAGATGCCTGGCGTGAGTGCTGACGATCAGCGCCTGTTGAAGAAACTGAAGTCCGACATGCTTAGCACCATCGAGTATGCACCGGTGTGGATCATCATGGCGGTCGCGCTGGCGTTAGGTATCGGTACGATGATTGGCTGGCGCCGTGTGGCAACGACTATCGGTGAGAAAATCGGTAAGAAAGGCATGACCTACGCTCAGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTT  >  NC_000913/3638584‑3639084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.