Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 63 [1] [0] 63 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.020)60 (1.160) 48/268 0.1 99.2% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048
                                                                                                                                           |                                                                                                                                             
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            >  2:636063‑M1/1‑140 (MQ=255)
      aTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag                                                                                                                                      >  1:311595‑M1/1‑134 (MQ=255)
       tttGCGAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga                                                                                                                                     <  2:909639‑M1/143‑11 (MQ=255)
            taagtcttgccaatCTCAGAAAACAGTGTCATCACAGCAGGAGATAGCAGTGACGTTACCGAGAGGACACCCGCAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCTCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                <  2:453515‑M1/137‑16 (MQ=255)
             aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg                                                                                                                               >  1:145816‑M1/1‑127 (MQ=255)
                ttttGCCAATTTGGTAAACCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt                                                                                                                            <  1:861286‑M1/143‑20 (MQ=255)
                ttctgccAATTTGGTAAAACAGTTGCATCACATCAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt                                                                                                                            <  1:741415‑M1/140‑20 (MQ=255)
                 ctcgccaATGGGGGAAAACAGTAGCACCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                           <  1:81445‑M1/140‑21 (MQ=255)
                  tggccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                          <  1:855046‑M1/141‑22 (MQ=255)
                      cAAGTTGGTAAGACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                      <  1:368572‑M1/143‑26 (MQ=255)
                             gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                               >  1:192003‑M1/1‑111 (MQ=255)
                               aaaaCATGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                             <  2:883709‑M1/143‑35 (MQ=255)
                                   cAGTCGCATCAGCGCAGGAGATAGCAATGACATTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                         <  2:956005‑M1/143‑39 (MQ=255)
                                           tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                 <  1:280328‑M1/143‑47 (MQ=255)
                                                 caGGAGATAGCAATGACGTAACCGAGGTGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtgaacgt                                                                                           <  2:32445‑M1/143‑53 (MQ=255)
                                                     agaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                       <  2:789329‑M1/143‑57 (MQ=255)
                                                      gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                      >  1:463201‑M1/1‑86 (MQ=255)
                                                            aaTGACGTGACCGGGTGGACGTCCGAAGAGCACATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                <  2:674119‑M1/143‑64 (MQ=255)
                                                             aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgtatacgtcaacgtgaaaccgacacc                                                                               >  1:302243‑M1/1‑79 (MQ=255)
                                                                 tgtTACTTAGTGTACACCCGAAGAGCAGATTGATCAAAAAAGTGACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                           <  1:34882‑M1/142‑69 (MQ=255)
                                                                 cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                           <  1:630779‑M1/143‑69 (MQ=255)
                                                                  gtcaccgAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                          <  1:834227‑M1/140‑70 (MQ=255)
                                                                      ccGAGTGGACACCCGAAGAGCAGGCTGATCAAAAAATTCACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                      <  1:356135‑M1/143‑74 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCCAAACATTTCCCGTTCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                     <  1:181787‑M1/143‑75 (MQ=255)
                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataatcgattctttttcgattgtctggctgcatgcgccaccctgcaaccggcaccggcagcgcgtgc                                                                   >  2:470995‑M1/1‑67 (MQ=255)
                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtga                                                                   >  2:665670‑M1/1‑67 (MQ=255)
                                                                               gaccCGGGGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtccaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                             <  2:800192‑M1/142‑83 (MQ=255)
                                                                               cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                             <  1:196167‑M1/143‑83 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCTGGAAGGTAagtgcaaagataatcgattccttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          <  2:588747‑M1/143‑86 (MQ=255)
                                                                                     aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg                                                       >  2:291528‑M1/1‑55 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACTGTACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttgtcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgtt                                                     <  2:220602‑M1/143‑91 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                     <  1:685648‑M1/143‑91 (MQ=255)
                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                               >  1:529535‑M1/1‑47 (MQ=255)
                                                                                               tGATCAAAAAATTTACCGCATTAGTCTCTTATTTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtgaaaccggcaccggaagtgcgtgaattctggggcgggtggatggac                                             >  2:122977‑M1/1‑45 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                           <  1:741674‑M1/143‑101 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                           <  1:798802‑M1/143‑101 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                          <  1:636063‑M1/143‑102 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                          >  1:255366‑M1/1‑42 (MQ=255)
                                                                                                   cAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                         <  2:278044‑M1/143‑103 (MQ=255)
                                                                                                   cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                         >  2:765927‑M1/1‑41 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggg                                        >  1:138351‑M1/1‑40 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                        >  1:679836‑M1/1‑40 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgggtggagctggaa                                       >  1:546566‑M1/1‑39 (MQ=255)
                                                                                                          tttcacgcactAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                  <  2:311595‑M1/138‑110 (MQ=255)
                                                                                                          tttACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgatggtctggctggatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                  <  1:701256‑M1/143‑110 (MQ=255)
                                                                                                          cttaCCGGTCGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatctattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                  <  2:886917‑M1/142‑110 (MQ=255)
                                                                                                                   cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggcggcatgcgtaaatcacatagtggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccg                         >  1:726597‑M1/1‑25 (MQ=255)
                                                                                                                    tAGGGCCGTATATGCGTGAAGGGAagtgcaaagataatcgattcgtgtgcgattgtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcttgaattctggggctggtggatggagctggaagcgcaggaatcccgt                        <  1:19026‑M1/143‑120 (MQ=255)
                                                                                                                    tAGGCCCGTATATTCGTGAAGGTAagtgaaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagtgcgtgacatctcttgctggtggatggagctggaagagcaggaatcccgt                        >  2:205589‑M1/1‑24 (MQ=255)
                                                                                                                    tAGGCCCGTATATCCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                        <  1:597629‑M1/143‑120 (MQ=255)
                                                                                                                     aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                       <  1:291528‑M1/143‑121 (MQ=255)
                                                                                                                       ggctgtataGTCGTGAAGGTAagtgcaaagataatcgattctgtgtcgattgtctggctgtatgcgtcaacgtgaaagcggcgccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                     <  2:930904‑M1/139‑123 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcgggaatcccgttttac                   >  1:132404‑M1/1‑19 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   <  2:190186‑M1/143‑125 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   >  1:730876‑M1/1‑19 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaagtctggagatggtgtgtggagcaggaagcgcagggatcccgttatac                   >  2:531163‑M1/1‑19 (MQ=255)
                                                                                                                          cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacc                  <  1:665670‑M1/143‑126 (MQ=255)
                                                                                                                            tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggcgggtggatggagctggaagcgcaggaatcccgttttaccta                >  1:367254‑M1/1‑16 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgcattctggggctggtggatggagctggaagcgcagggataccggtttacctaca              >  2:116587‑M1/1‑14 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca              <  1:103070‑M1/143‑130 (MQ=255)
                                                                                                                                 ctttGAAGGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAAGTGCTGCCTCAGATTCAg           <  2:629704/140‑1 (MQ=0)
                                                                                                                                       aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagt     >  1:645615‑M1/1‑5 (MQ=255)
                                                                                                                                          tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  2:252869‑M1/143‑142 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.