| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 8 (0.150) | 44 (0.910) | 38/252 | 0.2 | 87.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 6 (0.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
AGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209485‑1209760 | ttttgcggcattccacccccactgactgcttacagattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:813512‑M2/135‑143 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt > 1:376353‑M2/131‑143 (MQ=255) ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctacattgagtattgctccttctcccaaaccaaCGATTATGAAAATga > 2:563300‑M2/129‑143 (MQ=255) gcattccacccccactgactgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 1:5016‑M2/16‑1 (MQ=255) ccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt > 1:840801‑M2/123‑143 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTCTGAAAATGAAGAAATaa > 2:991383‑M2/121‑143 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa < 2:569931‑M2/23‑1 (MQ=255) cccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcaatacgatttgctcctcctcccaaacccaCGTTTATGAGAATGAAGCAATAACaa > 2:646636‑M2/118‑143 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg > 2:889467‑M2/117‑143 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcagtgagttttgatctttctcccacaccaaCTTTTATGAAATTGAAAAAATAAcaaa > 1:769611‑M2/117‑142 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgaggtttgctccttctccccaaccaaCGTTTATGAAAATGAAGAAATAACAAACAACTg > 2:327361‑M2/111‑143 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccctatccatCGTTTATGAAAAAAAAGAAATAACAAGCAAATGGCATCATTc > 1:275892‑M2/102‑143 (MQ=255) tgattgctcaataccaccaatcataaccgatatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacccaCGTTTATGAAAGTGAAGAAATACCAAGCCAATGGCATCattt > 2:521475‑M2/102‑142 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtcgccgttgctgcattgagccttgctccttctcccaaaccaaCGTTCATGACAATGAAGAAATAACAAGCAAATGGCACCATTCCTCCttt > 2:88121‑M2/95‑143 (MQ=255) accaagcataaccggtatagctatgaaaccggtgcgtcctaacgtagccgttgctgcattgagttttgctccctctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:644503‑M2/57‑1 (MQ=255) caatcatgaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAGTGGCATCATTCCTGCTTTTACCAggggg > 1:768802‑M2/85‑143 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGACTTTACCaggagg > 2:58829‑M2/85‑143 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:187379‑M2/82‑143 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc < 2:31411/143‑1 (MQ=255) ccccgtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:909790‑M2/67‑1 (MQ=255) accgttagagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCCGGGGGATTTAacg > 2:489163‑M2/77‑142 (MQ=255) ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:345339‑M2/68‑1 (MQ=255) acctatgaagccggttcgtcctaatgtagccgttgctgcattgagttttgctccttctctcaaaccaaCGTTTATGAAAATGAACAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 2:490194‑M2/75‑1 (MQ=255) ctatgaaaccggtgcgtcctaacgtagccgttgctgcattgagttgtgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 2:372898‑M2/77‑1 (MQ=255) gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAt > 2:667718‑M2/63‑143 (MQ=255) gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAt < 1:889467‑M2/81‑1 (MQ=255) gCTGAAGGCTACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc < 2:227151/143‑1 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGACGCAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc > 1:833546/1‑143 (MQ=255) ggtgcgtcctattttaggcgttgcttcattgagtgttgcgccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:898805‑M2/87‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgaattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg < 2:505073‑M2/88‑1 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAATCCTGCTTTTACAAAGGGGATTTAACATGATTATTGGCTCTGTAcgcg > 2:117573/1‑143 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTATGAAAATGAAGACATAACAAGCAAATGGCATCATTGATACTTCCTTCATGGAGATTTAGCAGCAGTATTGGCTATGTACGCGTa > 1:980195/1‑143 (MQ=255) cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt < 2:376353‑M2/91‑1 (MQ=255) gtcctaatgtagccgttgctgcattgagctatggcccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc < 1:266049‑M2/92‑1 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa > 2:627292‑M2/50‑143 (MQ=255) aaaagtagccggtgctgcatggagcttagctccttctcccaaaccacCGTTTATGAACATGAAGAAATAACAAGCAAATGGCATCACTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca < 1:124573‑M2/96‑1 (MQ=255) tcgccgttgctgcactgaattttgctcctgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTACCATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 1:436013‑M2/101‑1 (MQ=255) agccgttgctgcattgagtgttgctccttgtcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:664430‑M2/102‑1 (MQ=255) ttgctgcattgagtgttgctccttctcccaagccaaCGTTTATGAAAATGAAGAAATGACAAGCAAATGGCATCATTCCTGCTGTGACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:2652‑M2/107‑1 (MQ=255) ttgctgcatggaggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATGATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:139179‑M2/107‑1 (MQ=255) cagcAACATGTAATGTAGTGTCTTCTCCCAAACCATCGTTTATGAAAATGATTAAATAACAATTAAATGGCTTCGTTCCTGCTGTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:917306/140‑1 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCCTTCCTGCTTTTACCAGGAGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCACATGACCAGACcaca > 2:617423‑M2/33‑143 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca > 1:307146‑M2/33‑143 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCCGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt > 1:145669‑M2/30‑143 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGC‑AATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc > 1:49361‑M2/30‑143 (MQ=255) aatgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 1:103244‑M2/114‑1 (MQ=255) agtgttgctccttctcccgaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc < 2:529768‑M2/118‑1 (MQ=255) tttggctccttctcccaacacaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTCACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 1:824352‑M2/120‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa > 1:427237‑M2/19‑143 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACCAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCCAAAAATGACCAGAACACCGATGTACCACGgaac > 2:977269‑M2/18‑142 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATCTAACATGCTTATTGGCTATTTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc > 2:315505‑M2/16‑143 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAACCAAATGGCATCATTCATGCTTTTACCAGGAGGATATAACATGCTCATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGAAATgc > 2:728074‑M2/16‑143 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGGCCAGAACACAGATCTACACCGTAATgcg > 1:259326‑M2/15‑143 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg > 1:591400‑M2/15‑143 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc > 1:400680‑M2/14‑143 (MQ=255) tctcccaaaccaaCGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCATTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAACTCACCAGAACACAGGTCTACAACGTAACgcgc > 2:948886‑M2/14‑143 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATAATTCCTGCTTTGACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACACATGACCAGAACACAGATCTACAACGTAATGCGCt > 1:322950‑M2/13‑143 (MQ=255) ccaaaccagCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACTACGTAATGCGCTGaa < 2:836821‑M2/134‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:667718‑M2/134‑1 (MQ=255) cAAACCAACGTGTATGAAAATGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTGAACATGCTTATGGGCTATGTACGCGTCTCTCCAAGTGTCCCGAGCACGGCTTTTCTACGTAATgcaaaaaaa > 1:14727/1‑136 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt > 2:787075‑M2/8‑143 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACAAAGATCTACAACGTAATGCGCTGAaca > 2:788500‑M2/8‑142 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAActgc < 1:627292‑M2/138‑2 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc < 1:813512‑M2/140‑1 (MQ=255) aaCGTTTATTAAGATGTATAAATAACAAGCATATGTCATCATTCCTTTTTTTACCAGAGGTATTTAACATGCTTATTGACTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 2:248700‑M2/141‑1 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAAGTCCTGCGCTGAACTGTGCa > 2:957463‑M2/3‑143 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATGAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg > 2:957940‑M2/2‑143 (MQ=255) | AGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209485‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |