| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3915505 = | 52 (0.950) | 5 (0.100) | 4/266 | 6.6 | 8.9% | intergenic (‑305/+48) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | 3915535 = | 54 (1.060) | intergenic (‑335/+18) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTA > NC_000913/3915393‑3915673 | cAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTtg < 1:326919/143‑1 (MQ=255) gTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGc > 1:950045/1‑143 (MQ=255) gATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAACAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCttt > 1:592524/1‑143 (MQ=255) gATGTTTTTGCTCTTATGTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCttt < 1:184013/143‑1 (MQ=255) tGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTc > 1:305882/1‑143 (MQ=255) tGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTc > 1:535552/1‑143 (MQ=255) gCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTCTCCAGACTGGCTTTTGTGCTTTTCAAGCCgg < 1:964230/143‑1 (MQ=255) tcgttATTTCGAGCAAGGAATAAACAGGAAAACATGAGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGTGACACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGgt < 2:357573/140‑1 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGgtg > 1:249961/1‑143 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACCGGCTTCTTTTTTTTTCAAGCCAgtg > 1:930478/1‑143 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAAAGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCGATTGCACTGTTCAAGCCAgtg > 2:654501/1‑143 (MQ=255) ttATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGtt < 1:911624/143‑1 (MQ=255) tCGATCAATGAATAAAAAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATc < 1:931225/143‑1 (MQ=255) tCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCtt > 1:803180/1‑143 (MQ=255) aaTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGAGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCCGACTGGCTTTTGTGCTTTTCAGGCCGGTGTC‑ACATCGCtttt > 1:119128/1‑143 (MQ=255) aTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACGCGCGCAAGAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCGTTTCCAGCCGGTGTT‑ACCTCGcttctt > 2:747045/1‑143 (MQ=255) aTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCttttt > 1:556994/1‑143 (MQ=255) gAATAAACAGGAAAACAGGTGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTg < 1:610560/143‑1 (MQ=255) aaCAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGGATGGTTGCGGAGCGTGTCAAGCCGGGGTT‑ACATCGCTTTTTTGGTcca > 1:221937/1‑141 (MQ=255) aaCAGGAAAACAGGGGGGGTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGACTTGTGAACTTATCAAGCCGGAGTT‑ACATCGCTTGTTTGGTGaa > 2:856000/1‑143 (MQ=255) ggAAAATAGAGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCg < 2:337396/143‑1 (MQ=255) aagaGGGGTGTTGTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATaa < 1:160849/140‑1 (MQ=255) aaCAGGGGGTTTTTAGATGAGCAGGCTCTATGTGAACGCTATTCAGGACGGTTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATaa < 2:166586/143‑1 (MQ=255) aGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGGGTT‑ACACCGCTTTTTTGGTCAACTCGATCAcgc > 1:104347/1‑143 (MQ=255) aGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTCTTGTGATTTTCAAGCCGGTGTT‑GCATCGCTTTTGTGGGCCACTGGGTCAcgc > 1:203335/1‑143 (MQ=255) gggTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACTCGCAg > 1:612722/1‑143 (MQ=255) ttttATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTg > 2:842743/1‑143 (MQ=255) tttATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGCTCACACGCGCAAAAAAAAGCCAGCCTGTTCCCACACTGGCTTTCGCGCTTCTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGCTAACGCGCAGCTgc < 1:525562/143‑1 (MQ=255) agcagGGTCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCTCGATCGc > 2:152946/1‑143 (MQ=255) cagTATCTATGTGAACGATATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCtt < 1:384163/143‑1 (MQ=255) cagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGGGTT‑ACATCGCCTTTTTTGGCCACTCGATAACGCGCAGCCGCGCCATCGcct > 2:59596/1‑141 (MQ=255) atgATCTATGTGACCGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCttt < 2:289485/141‑1 (MQ=255) tATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTTCGCGATCGCTTTGGCCAg > 1:967377/1‑143 (MQ=255) tgtgAACGCTATTCAGGATGTGTTACACGGGTAAAAAAAAGCCAGCCTGTTTACAGACTGGCGTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt < 1:498190/143‑1 (MQ=255) ccGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATCACGAGCAGCTGCTCGATCGCTTTGGCCAGTTCCGCa < 1:732605/142‑1 (MQ=255) gcgggACGGGGCGCACGCGGAAAAAAAAGCCAGGCTGTTTCCAGACGGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt < 1:682364/140‑1 (MQ=255) taCGGGTCACATGCGCAAAGAAAAGCCAGCCTGTTTCCAGACTGGTTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGc < 2:307314/142‑1 (MQ=255) gACGGGTCACACGCGCAAGAAAAAGCCAGCCGGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGAGCGCTGTGGCCAGTTCCGCCGGCGCCTGGGc > 2:603678/1‑143 (MQ=255) gtgTCACGCGCGCAAATAGAGGCCGGCGTGTTGCTAGACTCGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGGTTTTTTGGTCAACTCGATACCGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTa < 2:71201/141‑1 (MQ=255) ggTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTaa < 2:556994/143‑1 (MQ=255) ctCACACGCGCATAATGGAGCCAGCCTGTTTCCAGACTGGCTGTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCACCTCGAGATCGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAAt < 2:5738/142‑1 (MQ=255) gcgcgggcAAAAAAAAGACAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTGTGGTCAACTCGATAACGCGTGTTTTCTGGATCACTATGGCCAGTTCCGCAGACGCCTGAGCGTAATCTa < 2:212340/137‑1 (MQ=255) gcgcAAAAAAAAGCCAGCCTGTTTCCAGCCTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACCCGCAGCTGCGCGATCGCTTTGTCGAGGTCCGCAGACGCCCGAGCCTAGTCTACgcc > 1:934890/1‑141 (MQ=255) gcgcAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGCGCGTACTCTACggc > 1:441940/1‑141 (MQ=255) aacaaaaGCCGGCCTGCTGACGGACCGGCGTGTGGGCGTGTCAAGCCGGTGTG‑ACATCGCTTTTTTGGTCAACTCGATCACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCgc < 1:926906/140‑2 (MQ=255) aaaaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGt > 1:603955/1‑143 (MQ=255) aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTga < 1:693539/143‑1 (MQ=255) aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTgag > 2:42355/1‑143 (MQ=255) aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGGGTT‑ACATCGCTTTTTTGGTCAAATCGATAACGCGCAGCTGCGCGATCGCTTTGGCCGGTTCCGCAGACGCCCGAGCGTGATCTACGTCGCCggcgg > 1:401367/1‑139 (MQ=255) ccagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgctg > 1:630260/1‑143 (MQ=255) ccagccTGCTTCAAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgctg < 1:565974/143‑1 (MQ=255) cagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgctgc > 1:830411/1‑143 (MQ=255) ccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTTGTCAACTCGATAACGCGCAGCTGAGCGATCGCTTTGGCCAGTTCCGCAGACGCCCGAGCGTAATCTACGTCGCCGTGAGAGCCGCTac > 2:410055/1‑142 (MQ=255) aGACTGGCTTTTGTGCTTTTCAAGACGGTGTA‑ACATCGCTTTTTTGGTCCACTCGATACCGCGCAGCTGTACGATCGATTTGGCCAGTTCAGCAGACGCCCGAGCGTAATCCTCGTGACCGCAAGGCCTGCTAATGTGCTCtt > 2:219376/1‑143 (MQ=255) gACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTc > 1:218530/1‑143 (MQ=255) ccttgtttttGTGCTTTTCAAGCTGGTGTTCCCGGCGCGGTTGTGG‑CGACTCGATATCGCGCAGCTGCGTGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCa < 2:960934/137‑1 (MQ=255) ccTGGCTTTTGTGCTTTTCACGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCa < 1:582260/142‑1 (MQ=255) ttttGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTa < 2:603955/143‑1 (MQ=255) ttttGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCGACGTCGCCGTGAGGGCTGCCGAGGTGCTCTAGAGccggg > 2:105208/1‑140 (MQ=255) | CAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTT‑ACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTA > NC_000913/3915393‑3915673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |