New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 610141	47 (1.260)	3 (0.080)	3/270	5.1	6.4%	noncoding (25/98 nt)	RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 2291200	43 (1.220)					noncoding (48/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCACAAAAATTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACC  >  NC_000913/610000‑610282                                                                                                                                              |                                                                                                                                              tCACAAAAATTCGCCGGATCGGACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGCGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc                                                                                                                                              >  1:65150/1‑143 (MQ=255)     aaaaaTTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGCAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCACGCCTACa                                                                                                                                          >  2:489651/1‑143 (MQ=255)       aaaTTCGCCGGATCGAACTCAACCAAATGCAGCGTATGTCCGGCAAAGGGGAGGCAGATATGCGTAGTTTTCATATCGACCATCTTCGAGACTGCTTAGCAACACAAACCTGCCCGATGCGCTACGCCTATCAGACCcacagg                                                                                                                                        >  2:201440/1‑141 (MQ=255)       aaaTTCGCCGGATCGAACTCAACAACATGCAGCGTATGTCCGGCAAAGGGGAGCGAGGTATGCGTAGTTATCATATAGTCCAGATTCGAGACTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTACCAGGCCTACATg                                                                                                                                        >  2:201432/1‑143 (MQ=37)          ttCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTGATATCGTGTGTGTTCGAGACTGATGACAAACGCAAAACTGCCTGATGAGCTAAGCTTATCAGGACTACATGATc                                                                                                                                     >  1:309915/1‑143 (MQ=37)          tacGCCGGACCGAACGCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTc                                                                                                                                     <  2:2024/141‑1 (MQ=255)                          caacaaAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGCCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATCTATTGAAt                                                                                                                     >  2:270144/1‑143 (MQ=255)                          caacaaAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAAt                                                                                                                     <  2:146453/143‑1 (MQ=255)                          caacaaAATGCAGCGTATGTCCGGCAAAGGGGAGGGAAGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAAt                                                                                                                     <  2:480752/143‑1 (MQ=255)                               aaaTGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCa                                                                                                                >  2:606561/1‑143 (MQ=255)                                           tGTCCGGCAAAGGTGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAg                                                                                                    <  1:158966/143‑1 (MQ=255)                                           tGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAg                                                                                                    >  1:255828/1‑143 (MQ=255)                                             tCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGc                                                                                                  >  1:5305/1‑143 (MQ=255)                                             tCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGc                                                                                                  >  2:289086/1‑143 (MQ=255)                                              cctggaaaGGTGAGGGAGGTATGCGTCGTGTTCTTATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTGATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGcc                                                                                                 <  2:574776/138‑1 (MQ=25)                                              ccGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCTTATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGcc                                                                                                 <  1:22963/143‑1 (MQ=255)                                               cGGCAAAGGGGAGGGAGGTATGCGTACTTTTCATACCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGCCCTACATCGTCCTGCAACCTATTACATTGGCAAGCCTGTTGTCGGccc                                                                                                >  2:326866/1‑142 (MQ=25)                                                ggCAAAGGGGAGGGAGGTATGCGTAGGTTTCATATCGACCATATTCGAGGCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCgg                                                                                               >  2:641954/1‑143 (MQ=255)                                                     aGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAg                                                                                          <  2:507439/143‑1 (MQ=255)                                                       gggagggaGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAACCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATCTTGAATTGGCAAGAGTTCTGTAGGCCGGATCAGGc                                                                                        >  2:668831/1‑143 (MQ=25)                                                        ggatggagGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCg                                                                                       <  2:410546/143‑1 (MQ=255)                                                                   tGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCa                                                                            >  1:426665/1‑143 (MQ=255)                                                                            ttCAGAGCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGGCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg                                                                   <  2:48459/143‑1 (MQ=255)                                                                                 gtCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGGTACGCTTATCAGGCCTACATGGTCCGGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAacga                                                              <  2:139658/142‑1 (MQ=255)                                                                                    gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGAcgc                                                           >  1:77848/1‑143 (MQ=255)                                                                                        gtagtCGAGACTGTTGAGAATCGCAAAACTGCTTGAGGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAAGTGGCTAGATGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCAc                                                       <  2:68713/139‑1 (MQ=18)                                                                                            tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTg                                                   <  1:548859/143‑1 (MQ=255)                                                                                              gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCGCTTTGTc                                                 >  1:652706/1‑143 (MQ=255)                                                                                                taCTGATGACAAACTCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCTTTCACGCCGCATCCAGCATGAACGACGCGCACTTTGTcaa                                               <  2:146269/142‑1 (MQ=255)                                                                                                gaCTGATGACAACCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTcaa                                               <  2:426830/143‑1 (MQ=255)                                                                                                    gatgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCATGAACGACGCGCACTTTGTCAACAAt                                           >  1:43845/1‑143 (MQ=255)                                                                                                      tgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTCTCAACAATCt                                         >  2:39203/1‑143 (MQ=255)                                                                                                       gaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTg                                        >  2:412139/1‑143 (MQ=255)                                                                                                         cAAACGCAAAGCTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGAc                                      <  1:110656/143‑1 (MQ=255)                                                                                                                aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATGTGACGTTAGCa                               >  2:363593/1‑143 (MQ=255)                                                                                                                       ccTGATGCGCTACGCTTATCAGGCCTACATGGTCCCGCAATATATTGAATTGGCAAGATTTTTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTGTGTCAACAATCTGCCGTTAGCAtgaaacg                        >  2:551769/1‑137 (MQ=21)                                                                                                                        ttGATGGGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGAGTTTTCTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGTACTTTGTCAACAATCTGACGTTAGCATCAGAAGt                       <  2:393009/142‑1 (MQ=255)                                                                                                                         tGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGCACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTg                      >  1:355709/1‑143 (MQ=255)                                                                                                                          gATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGGTAGCAGCAGAAGTgg                     >  1:33888/1‑143 (MQ=255)                                                                                                                           aTGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGCTGAGGCGTTCTCGCCGCTTCCGGCATGAACGACGCGCACTTTGTCAACAATATGACGACAACATCAGaaaaggg                    >  1:428021/1‑138 (MQ=18)                                                                                                                               gcTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGtt                <  1:444548/143‑1 (MQ=255)                                                                                                                                cTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGCACGACGCGCACTTTGTCAACAATCTGACGCTAGCATCAGAAGTGGGTGttc               >  2:449889/1‑142 (MQ=255)                                                                                                                                   cGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACg            <  1:289086/143‑1 (MQ=255)                                                                                                                                    gCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGc           >  1:480403/1‑143 (MQ=255)                                                                                                                                    gCTTAGCAGGCCTACATGGCCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTATGc           <  2:173567/143‑1 (MQ=255)                                                                                                                                      ttATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTc         <  1:606561/143‑1 (MQ=255)                                                                                                                                             gCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATAcc  <  2:255828/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              TCACAAAAATTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTGTCAACAATCTGACGTTAGCATCAGAAGTGGGTGTTTACGCTCATATACC  >  NC_000913/610000‑610282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.