New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 229120745 (1.210)3 (0.080) 3/270 5.1 7.8% noncoding (55/199 nt) RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
?NC_000913 2538615 = 28 (0.790)noncoding (81/98 nt) RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGG  >  NC_000913/2291077‑2291349
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tgcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                                                    <  2:554837/143‑1 (MQ=255)
 gcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTAt                                                                                                                                   <  2:382593/143‑1 (MQ=255)
  cGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCACCCGTCTGAGATTTATGACAACCGCACAACTGCCTGATGCGCTACGCtgctc                                                                                                                                  >  1:215746/1‑139 (MQ=255)
         tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                                           >  1:299796/1‑143 (MQ=255)
         tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                                           >  1:508459/1‑143 (MQ=255)
                 cGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGGTTTATGACCAGCGCAAGACTGCCTGATGCGCTACGCTTATCAGGCCTAAGTGgatc                                                                                                                   >  1:34510/1‑143 (MQ=38)
                  gCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAAGCGCTACGCTTAACAGGCCTACGTgcctcg                                                                                                                  >  2:405571/1‑138 (MQ=255)
                    tCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGTGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgat                                                                                                                <  1:140574/143‑1 (MQ=255)
                     cACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAAATACCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgatc                                                                                                               >  1:60738/1‑143 (MQ=255)
                      aCGCGTGGCGGCCACCATTCTGTTCCTGCAACAACTCGTGGCACAAGAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCa                                                                                                              >  1:675012/1‑143 (MQ=255)
                             gcggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTAtt                                                                                                       >  1:556630/1‑143 (MQ=255)
                              cggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTCTTg                                                                                                      >  2:31246/1‑143 (MQ=255)
                               ggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGa                                                                                                     >  2:360937/1‑143 (MQ=255)
                                gcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGaa                                                                                                    >  1:498657/1‑143 (MQ=255)
                                 cctccaTGCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAAt                                                                                                   <  2:196795/140‑1 (MQ=255)
                                    ccaTTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTCCCTGATGCGCTACGCTTATCCGGCCTACGTGGATCGATCAATTTATTGAATTTa                                                                                                <  1:350216/143‑1 (MQ=255)
                                           gTTCTTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtt                                                                                         <  1:536936/143‑1 (MQ=255)
                                             tCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtttt                                                                                       >  1:315388/1‑143 (MQ=255)
                                               cTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCCATCAATTTATTGAATTTACCCAAATTTGt                                                                                     >  2:25795/1‑143 (MQ=255)
                                                tGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCACTTAATGCAATTTACACAATTTTGTa                                                                                    >  2:262450/1‑143 (MQ=255)
                                                     caacGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCg                                                                               >  1:585608/1‑143 (MQ=255)
                                                       gcgcgGGGCAGAGTAAAAATAGCCCGATGGAGTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGa                                                                             <  1:69360/142‑1 (MQ=255)
                                                         gcgGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATa                                                                           >  1:511057/1‑143 (MQ=255)
                                                           ggggCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAg                                                                         >  2:224072/1‑143 (MQ=255)
                                                              gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGTTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCg                                                                      >  1:613775/1‑143 (MQ=255)
                                                              gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGCATTTACACCATTTTGTAGGCCGGATAAGGCg                                                                      >  2:593452/1‑143 (MQ=255)
                                                                acaATAAAAATAGCACGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAGTTTATTGAATTTACACAATTTTGTAGGCCGGACAGGGCGtt                                                                    >  1:87797/1‑143 (MQ=255)
                                                                   aTAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCAc                                                                 >  2:126337/1‑143 (MQ=255)
                                                                          tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACCATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          >  1:223626/1‑143 (MQ=255)
                                                                          tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          <  2:585756/143‑1 (MQ=255)
                                                                          gaGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          <  2:212412/142‑1 (MQ=255)
                                                                             cccGATGCATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                       <  2:56168/143‑1 (MQ=255)
                                                                              ccGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCgg                                                      >  2:423968/1‑143 (MQ=255)
                                                                               cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                     <  2:533564/143‑1 (MQ=25)
                                                                               cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCCGc                                                     >  2:556610/1‑143 (MQ=255)
                                                                                gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                    >  1:342445/1‑143 (MQ=255)
                                                                                gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGACCAATTTATTGAATTTACACAATTTTGTCGGCCGGATACGTCGTTCCCGCCCCCTCCGGcc                                                    >  1:310267/1‑142 (MQ=21)
                                                                                                       aTTTATGACAAACGCAACACGGCCTCATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAAGTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAAc                             <  2:394028/143‑1 (MQ=255)
                                                                                                           aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTc                         <  2:556630/143‑1 (MQ=255)
                                                                                                             gACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTa                       <  2:675012/143‑1 (MQ=255)
                                                                                                              aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAg                      <  1:44366/143‑1 (MQ=255)
                                                                                                                aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAATAGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAATAAGCGCACTTCGTCAACAGTCTAGcc                    >  2:4560/1‑143 (MQ=255)
                                                                                                                    gCAAACCTGCCTGACGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAt                <  1:83457/143‑1 (MQ=255)
                                                                                                                              cTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATGTTGTAGGCCGGATAAGGCGTTCACGCCGCAACCGACATAGACTAAGCGCACTTTGTCACCCGTCTAGCCCGATGGCATccccg      >  1:599105/1‑142 (MQ=21)
                                                                                                                                  tGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCgg  <  2:299796/143‑1 (MQ=255)
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TGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGG  >  NC_000913/2291077‑2291349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.