New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	37 (0.990)	4 (0.120)	4/252	4.3	11.3%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	30 (0.910)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTA  >  NC_000913/1209460‑1209742                                                                                                                                               |                                                                                                                                             acgccggCAATTCATTTGTCGGATAAGCCGTTGCCAGTTCCGGGCATTCGTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag                                                                                                                                              <  1:238291/138‑1 (MQ=255)   tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCGACAGGTAATGCagagac                                                                                                                                            >  1:335805/1‑141 (MQ=255)         aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCGGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGGGGAGTGGCTGAAGGCCACGGAGCGGGGACACCAACAGGTAGTGCAGAGCCTTCTcc                                                                                                                                      >  1:286972/1‑143 (MQ=255)             tatttGTCGGAGAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCaaa                                                                                                                                  <  1:105379/143‑1 (MQ=255)               tttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCTGCTCCGAAAcc                                                                                                                                >  2:209512/1‑143 (MQ=255)                 tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaa                                                                                                                              <  2:394440/143‑1 (MQ=255)                 tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaa                                                                                                                              <  1:146068/143‑1 (MQ=255)                       aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                        <  2:174628/143‑1 (MQ=255)                            ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgaga                                                                                                                   <  1:5294/143‑7 (MQ=255)                             cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                  <  1:302343/143‑1 (MQ=255)                                        ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAGCGTGTATGAAAATGAAGAAATaa                                                                                                       >  1:289946/1‑143 (MQ=255)                                           tgTATTCTTCAGCAGAAAAAGCGGCACGATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                    <  1:670654/142‑1 (MQ=255)                                           gctATTCTTCAGCAGAAAATGCGGCACCATTGTATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                    <  2:363125/141‑1 (MQ=255)                                                     agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                                          <  1:411324/143‑1 (MQ=255)                                                                          gcatgacagcaagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                     <  1:371182/137‑1 (MQ=255)                                                                            aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                   >  1:6711/1‑143 (MQ=255)                                                                             tttCGGCGAGTCTGTTGGCCGAGTGGCGGAAGGCAACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAATCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                  <  1:369721/143‑1 (MQ=255)                                                                                 agccagccTGTTGGCGGAGTGGCTGAACGCCACGGAACCGGCACACCCACAGGTAATGCAGAGCCTTCTTCCAAACCAACGTTTATGAAAATGAACACATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa                                                              <  1:213831/143‑1 (MQ=255)                                                                                   ccagccTGTGGGCGGAGTGTCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                            <  2:16297/143‑1 (MQ=255)                                                                                      gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCTTGCTTTTACCAGGGGCACATAACATg                                                         >  2:293615/1‑143 (MQ=255)                                                                                          gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                     <  2:553440/143‑1 (MQ=255)                                                                                              gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATCgg                                                 >  2:437211/1‑143 (MQ=255)                                                                                                ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt                                               <  1:556307/143‑1 (MQ=255)                                                                                                ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGCCt                                               >  1:594276/1‑143 (MQ=255)                                                                                                     ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAGATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                          >  1:428174/1‑143 (MQ=255)                                                                                                      gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTATCCCAAACCAACGTATGTGAAAATGAAGAAATACCAAGCAAAAGGAAAAATTTCGGCTTTTAACAGGAGAATTTAACATGGTTATTGGCTAGGTaa                                         >  2:140609/1‑142 (MQ=255)                                                                                                             gCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTTCTCCCCCACCAACGTTCATGAAACTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTACGTCCGCGTATc                                  >  2:31428/1‑143 (MQ=255)                                                                                                                      ccGGGACACCAACAGGGAATGGAGGACCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                         <  2:353171/143‑1 (MQ=255)                                                                                                                       cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                        >  1:9501/1‑143 (MQ=255)                                                                                                                        gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGCGGCTTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAca                       >  1:214980/1‑142 (MQ=255)                                                                                                                        gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                       >  2:387605/1‑143 (MQ=255)                                                                                                                          gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGTCTATGTACGCGTATAAAAAAATGACCAg                     >  2:55785/1‑143 (MQ=255)                                                                                                                           acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACCAGCAACTGGCATCATTCCTGCTTTTACAAGGGGGATTTAAAATGACTATTGGCTATGTACGCGTATCACCAAATGACgaga                    >  2:429840/1‑143 (MQ=255)                                                                                                                                aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca               <  1:463751/143‑1 (MQ=255)                                                                                                                                 aCAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg              <  2:440302/143‑1 (MQ=255)                                                                                                                                 aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTCCGCGTATCAACAAACGCCCCGACCACAg              >  1:246209/1‑143 (MQ=255)                                                                                                                                      tAATGCAGAGCCTTCTCCCAAACCAACAATTATGAAAATGAAGAAATATCAAGCAAATGGCATCATTCCTGCTTTTACAAGGAGCATTCAAGATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGACCACCGATCTa         >  2:275522/1‑143 (MQ=255)                                                                                                                                             gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa  <  1:239107/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTA  >  NC_000913/1209460‑1209742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.