New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3567519 =	47 (1.260)	3 (0.080)	3/272	5.1	6.2%	coding (515/1434 nt)	glgA	glycogen synthase
	?	NC_000913	3567558 =	46 (1.290)					coding (476/1434 nt)	glgA	glycogen synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATAGTACAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGCCCCAACC  >  NC_000913/3567421‑3567689                                                                                                                                          |                                                                                                                                    cATAGTACAGACCCGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAac                                                                                                                                <  1:35930/143‑1 (MQ=255)  aTAGTACAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAaca                                                                                                                               <  1:546791/143‑1 (MQ=255)    aGTACAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACAcc                                                                                                                             >  1:479051/1‑143 (MQ=255)        cAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTACACACCGACt                                                                                                                         >  1:103448/1‑143 (MQ=255)             cGGCCTTCCGGAAAGTGAGTTGTCCGTTGCTTTCCAGCTTTTCGATATTAGAGAATGACCAGTGCATTTGGTTGTCATTCATGTGATGTGCATAGAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc                                                                                                                    <  2:508240/143‑1 (MQ=255)             cGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc                                                                                                                    >  2:144667/1‑143 (MQ=255)                 ctccAGGAAAGAGCCTCGTCCGTTGAATTCCAGCCCAGGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGAc                                                                                                                <  1:131452/140‑1 (MQ=255)                      ggAAGGAGATGTGTCCGTTCAATTCCAGCCCATGCATATGAAATAATGACCACGGCAATTGGACGTCATTCATCTGATGCGCATAACGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcg                                                                                                           <  1:154531/143‑1 (MQ=255)                      ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGGTAGGCCAGGTTGTGAACAGTACACACCGACTTCGCCGGACGccag                                                                                                           >  2:203747/1‑141 (MQ=255)                      ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATAATAAAGAATGACCATGGCAATTGGATGACATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTACACAGTAAACACCGACCTCGCCCGACGcccc                                                                                                           >  2:203828/1‑142 (MQ=255)                       gAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgc                                                                                                          >  2:153860/1‑143 (MQ=255)                        aaaGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgcg                                                                                                         >  1:410001/1‑143 (MQ=255)                                 tGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAg                                                                                                <  1:392774/143‑1 (MQ=255)                                  gTCCGTTGAATTCCAGCCCATGAATATTAAAGAAGGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGa                                                                                               <  2:623680/143‑1 (MQ=255)                                      gTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCACTTGAATGTCAATCATGTGATATGCATAAAAAATGCCTAGATAGGCCAGGTAGTGCACAGTAAAAACCAACGACGCAGGACGCGCGCGCGCCGCCaacaacg                                                                                           >  2:106691/1‑137 (MQ=255)                                          gcttCCAGCCCTTTAATATTGAACTATGACGCTGGCAATTGGGTGTCATTCATGTGCTGTGCCTAACACACGCCTTGATAGGCCAGGTTGCGCCCAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGCTACGCAgg                                                                                       <  2:459312/141‑1 (MQ=255)                                                   ccATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGcc                                                                              >  2:175911/1‑143 (MQ=255)                                                    cATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCt                                                                             >  1:625495/1‑143 (MQ=255)                                                         atatTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATg                                                                        <  1:157757/143‑1 (MQ=255)                                                               aagaaagaCCATGGCCATGGGATGGCATTCATGTGATGTGCAGAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTc                                                                  <  1:452892/143‑1 (MQ=255)                                                               aaGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGGAGGCGCAAGGCCTGCATGCCAGTc                                                                  >  1:320837/1‑143 (MQ=255)                                                                    tGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTgcg                                                             <  1:407034/143‑1 (MQ=255)                                                                           ggCAATTGGATGTCATGCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac                                                      <  1:76917/143‑1 (MQ=255)                                                                           ggCAATTCGATGTCATGCATGTGATGTGCATAAAGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac                                                      <  2:257252/143‑1 (MQ=255)                                                                              aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGGCTGCATGCCAGTCGTGCGCATGgaccac                                                   >  2:45007/1‑143 (MQ=255)                                                                              aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcaccac                                                   >  1:164855/1‑143 (MQ=255)                                                                                  ggATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCa                                               <  1:324763/143‑1 (MQ=255)                                                                                     tGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGa                                            >  1:534930/1‑143 (MQ=255)                                                                                            catGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGa                                     <  1:151275/143‑1 (MQ=255)                                                                                              tgtgatgtgCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCCCCAGATCCGGACCCCAGact                                   >  2:168088/1‑141 (MQ=255)                                                                                              tctgatgtgCATAAAACGCGCCTTGATAGGCCAGGTCGTGCACAGTAAACAGCGACTTCGCCGGACGCCGGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAAt                                   <  2:459252/141‑1 (MQ=255)                                                                                                 gatgggCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCTGCATGCCACTCGTGCGCATGCACCCCACCAGGACGCCAGAATggg                                >  2:515251/1‑143 (MQ=255)                                                                                                        aTAAAACATGCCTTGATAGGCCAGGTTGTGCAGAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATAAGGACGCCAGAATGGGGCAAGcc                         >  2:351690/1‑143 (MQ=255)                                                                                                            aaCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCt                     >  1:410165/1‑143 (MQ=255)                                                                                                                tgtgttGATAGGCCAGGTTGTGCACAGTATACACCGACTTCGCCGGACGTCCGCGCTCCGCCATTTACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGcc                 <  1:424878/139‑1 (MQ=255)                                                                                                                 gCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCa                <  2:122601/143‑1 (MQ=255)                                                                                                                  ccTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGACTGGCTCAAGCCCGCTGGCCAt               >  2:454702/1‑143 (MQ=255)                                                                                                                   cTTGATAGGCCAGGTTGTGCCCAGTAAACACCGACTTCGCCGACCGCCCGCGCGCAGCCAGATACGCAGCCGCAAGACCTGCATGCCACTCGTGCGCCTGCCCCCCATCCGGACGCCAGAATGGGCCAAACCCGCTGGcccat              >  1:586989/1‑140 (MQ=255)                                                                                                                   cTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCTTGCCAGTCGTGCGCATGCACCGCATCAGGACGCCAGAATCGGTCAAGGCCCCTGGCCagt              >  2:221247/1‑141 (MQ=255)                                                                                                                    ttGATCGGCCACGTTGTCCACAGTAAACACCGACTTCGCCCGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCAttt             <  2:630373/143‑1 (MQ=255)                                                                                                                     tGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGCGGCCCGCGCGCCGCCAGATACGCAGGCGCCAGGCCTGCATGCCCGTCGTGCGCATGCACCACACCCGGCCGCCAGAGTGGGTCAAGCCCGCTGcccctctc            >  1:126652/1‑138 (MQ=255)                                                                                                                         aGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGcc        <  1:144667/143‑1 (MQ=255)                                                                                                                           gCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGcccc      >  1:604275/1‑143 (MQ=255)                                                                                                                           gCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGcccc      <  1:153860/143‑1 (MQ=255)                                                                                                                             cAGGTTGTGCACAGTAAACACCGACTGCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCGGTCGGGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGCCCCaa    <  2:471887/143‑1 (MQ=255)                                                                                                                               ggTTGTGCACAGTAACCCCCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGCCCCAacc  <  1:214123/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                    CATAGTACAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGGTCAAGCCCGCTGGCCATTTCTGCCCCAACC  >  NC_000913/3567421‑3567689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.