New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 417180336 (0.970)6 (0.160) 3/280 5.3 13.0% intergenic (+47/‑254) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
?NC_000913 = 4213162 45 (1.230)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT  >  NC_000913/4213026‑4213304
                                                                                                                                        |                                                                                                                                              
gctAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACGCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGa                                                                                                                                          <  1:63313/141‑1 (MQ=12)
 aTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATAAAATTAGaa                                                                                                                                         >  2:454549/1‑143 (MQ=18)
       cAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCGCATGCGAGAGTAGGGAAAGGCCAGGGATCAAAGTAGAAAAAccc                                                                                                                                   >  1:136422/1‑143 (MQ=11)
         gagtgtGCCGGGCGGGAGTGGCGCGGTGGTCCTACCTGACCCCGTGCCGCACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCg                                                                                                                                 <  1:186954/138‑1 (MQ=14)
             ttGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGtgc                                                                                                                             >  1:650381/1‑141 (MQ=255)
               gCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTCGGGAACTGCCAGGCATCAAATTAGGCCGACCCCGGTCCAt                                                                                                                           >  2:329689/1‑143 (MQ=11)
                 cTGGCGGCAGTAGCGCGGTGGTCACACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTACAAAAACCCCGGTCCATaa                                                                                                                         >  2:307967/1‑143 (MQ=255)
                  tGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAGCCCGGTCCATAAg                                                                                                                        >  1:365807/1‑143 (MQ=255)
                           tAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtt                                                                                                               >  1:220273/1‑143 (MQ=255)
                             gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  1:238876/143‑1 (MQ=255)
                             gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  1:453081/143‑1 (MQ=255)
                             gcgcCGTGGTCCCACCTGACCCCCTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  1:141129/143‑1 (MQ=255)
                               gcgGTGGCCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGTATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttttt                                                                                                           <  1:347097/143‑1 (MQ=255)
                                      tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGGGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACTCCGGTCCATAAGGCCGGGGTTTTTTGCGTATc                                                                                                    >  1:101218/1‑143 (MQ=255)
                                      tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCACCAAATTAGAAAAGCCCCGGTCCATAAGGACGGGGTTGTTTGCatagc                                                                                                    >  2:283619/1‑141 (MQ=255)
                                        cgaCCTGATCCCGTGCCGAATTCGGAGGTGAAGCGCCGTAGCGCCGATGGTAGTGTGGGGTCGCCCCATGCGAGTGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCaa                                                                                                  <  2:358311/141‑1 (MQ=18)
                                           ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAatta                                                                                               <  1:25940/143‑1 (MQ=255)
                                               aCCCCACGCCGAACTCAGAAGGGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTg                                                                                           <  1:353854/143‑1 (MQ=255)
                                                 cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCa                                                                                         >  2:418374/1‑143 (MQ=255)
                                                    aTGCCGAACCCAGAAGTGAAACGCCGTAGCGACGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatga                                                                                      <  1:297523/143‑1 (MQ=255)
                                                         gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                 <  1:351739/143‑1 (MQ=255)
                                                         gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                 >  2:149984/1‑143 (MQ=255)
                                                          aaCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAgg                                                                                <  2:644703/143‑1 (MQ=255)
                                                               aGAAGTGACACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAAtc                                                                           <  1:126017/143‑1 (MQ=255)
                                                                  aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAAGCGAGAGTAGGGAACTGACAGGCAGCGAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                                                                        <  1:458494/143‑1 (MQ=255)
                                                                        aagCCGGAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCAGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAg                                                                  <  1:425774/141‑1 (MQ=255)
                                                                           ccGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                                                               >  1:86912/1‑143 (MQ=255)
                                                                              tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAGCCCCTTTCCAAAAGCCGCGGGGTGTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                            <  1:125456/143‑1 (MQ=21)
                                                                                  gcCGATGGTAGTGTGGGGTCTCGCAATGCGAGAGTAGTTAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTatat                                                        >  1:497226/1‑143 (MQ=255)
                                                                                            gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgt                                              >  1:583695/1‑143 (MQ=255)
                                                                                                   gTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATc                                       >  1:540695/1‑143 (MQ=255)
                                                                                                         ccATGCGAGAGTAGGGAACTGCCAGGCACCAAACTTATGCTGCCTCGGTCCAAAAGGCCGTGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTa                                 <  2:473687/143‑1 (MQ=255)
                                                                                                           gtGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACt                               <  2:279362/142‑1 (MQ=255)
                                                                                                           aTGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTCGTTGCCTACCAATTGTTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTCCt                               >  1:525739/1‑143 (MQ=39)
                                                                                                               gagaGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTc                           <  2:296561/143‑1 (MQ=255)
                                                                                                                 gagTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTcgc                         <  2:86912/143‑1 (MQ=255)
                                                                                                                  cggaGGGAACTGCCGGGCATCAAGTGAGAAAAACCCCGTTCCATAAGGGCGGGGTTTTTTGCATATCAATTTGTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTcgcg                        <  2:394292/140‑1 (MQ=255)
                                                                                                                  agTAGGGAACTGCCAGGCATCAAATTAGAAAAAACCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGCTGAAGGGAATCTCATGTCAGTTCTGTATATCCACATTCGTCGTAATCAAATTACTGTTcgcg                        >  2:234484/1‑143 (MQ=255)
                                                                                                                          aCTGTCAGTCATCAATTTAGAAAATCCCCGGTCCATAAGGCCGGGTTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa                <  1:651486/143‑1 (MQ=255)
                                                                                                                            tGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAg              >  1:373852/1‑143 (MQ=255)
                                                                                                                              ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGGAGGGAATCTCATGTCAGTTATGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAGAGCa            >  1:546314/1‑143 (MQ=255)
                                                                                                                                  gCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACg        >  2:117494/1‑143 (MQ=255)
                                                                                                                                    aTCAAATTAGAAAAACCCCGGTCCATGAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCCGTATATCCAATTTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTg      <  1:567090/143‑1 (MQ=255)
                                                                                                                                       aaaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCAAAACAATTATTTGCATGATGAAGGGAATCTCATGTTAGTACTGTAGATCCAAATGCGTCGTAATCAAATTAATGTTAGCTATCTTGAAAGCAAACGTGAAg   >  2:511404/1‑143 (MQ=255)
                                                                                                                                        aaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATATGTCGGACGCAGAGTACTGTTCGCGATCTTGAACGCAACAGTGCAgt  >  2:473969/1‑143 (MQ=255)
                                                                                                                                        |                                                                                                                                              
GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT  >  NC_000913/4213026‑4213304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.