Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 39 [0] [1] 40 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)34 (0.970) 29/268 0.2 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

ATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978375‑1978642
                                                                                                                               |                                                                                                                                            
gtgagttatttttccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAGACTCAATTACTTAACATAAATGtttcagtcatacttt                                                                                                                               >  2:356500‑M1/8‑128 (MQ=255)
        tttttCCTAAATCGACGCATGTGTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACATAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  2:255830‑M1/143‑24 (MQ=255)
         ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                      <  1:448809‑M1/143‑25 (MQ=255)
           ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                    >  1:474204‑M1/1‑117 (MQ=255)
              cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACCACTGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                                                                                                 <  1:248188‑M1/143‑30 (MQ=255)
                  aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                             <  2:65015‑M1/143‑34 (MQ=255)
                   gcgACGCAGCTGTACTCGTCTCTACACTCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                            <  2:105886‑M1/142‑35 (MQ=255)
                      aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                         >  2:573723‑M1/1‑106 (MQ=255)
                         gagctctactcctCACTCCACTCACCTACAACGGTGGGGGGCTGCGATTTTCACTAATGCGTGATGCAGATCCCACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                      <  2:7924‑M1/137‑41 (MQ=255)
                                  tCGTCTCTAAATGCACATACAACGTAGGAGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             <  2:422674‑M1/143‑50 (MQ=255)
                                   cGTCACTACACGCACATACAACGGAGGGGGGATGACATTTCGAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                            <  2:473701‑M1/143‑51 (MQ=255)
                                        cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                       >  2:527336‑M1/1‑88 (MQ=255)
                                              gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttcgggtgtcttatagtctgttaaaaagtttttcgctacgcta                                                                                 >  1:634443‑M1/1‑82 (MQ=255)
                                              gCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 <  2:254364‑M1/143‑62 (MQ=255)
                                                        cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                       >  1:247341‑M1/1‑72 (MQ=255)
                                                           aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                    >  1:90339‑M1/1‑69 (MQ=255)
                                                           aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtagtttagtctgctatagagcgtgtcgctacgcgagcaggaaacaatg                                                                    >  1:279155‑M1/1‑69 (MQ=255)
                                                                 gctgctATTTTTAATAATGCATTATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatatgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                              <  2:208809‑M1/143‑81 (MQ=255)
                                                                   tGCGATTTTCTATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAACTCtataagtcatacttttgttctgggtgtctttcaatctgttaaaaagtttttctctactttagcaagcaaaaactaaacagta                                                            >  2:255240‑M1/1‑61 (MQ=255)
                                                                     cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                                                          >  2:262998‑M1/1‑59 (MQ=255)
                                                                     cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                                                          >  2:246710‑M1/1‑59 (MQ=255)
                                                                          ttaaatactccgTGATGCAGATCACACAAAACACCCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                     <  1:71994‑M1/140‑90 (MQ=255)
                                                                                aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                               <  1:573723‑M1/143‑96 (MQ=255)
                                                                                    cGTTATGCACATCACACAAACCACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtggatttcaatctgttaaaaagtgtttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                           <  1:108691‑M1/143‑100 (MQ=255)
                                                                                        tttgagattACATAAAACACTCAATTACTTAATATTAAAGtataagacatacgttgggtttggggggatttcaatctgttaaaaagtttttcgctacgcgagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  1:391734‑M1/139‑104 (MQ=255)
                                                                                            aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcacaaatgaaacagtaataaccgaactgggatattgcgccc                                   >  2:224536‑M1/1‑36 (MQ=255)
                                                                                                 acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                              >  2:176914‑M1/1‑31 (MQ=255)
                                                                                                       accactcAGTTACTTAACCTCAACGgataagtcatacttttgttttgggtggatatcaatccgtgaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataagcgaaatgggatgttgcgcacagtcaaaataa                        <  1:382777‑M1/141‑119 (MQ=255)
                                                                                                       aaCACTCAATTACTGAACATAAATGtataagtcatacatttgtgttgggtgtatttcactctgttaaaaagttcttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                        <  1:458248‑M1/143‑119 (MQ=255)
                                                                                                            tccgttacgtAACATCAAGGtataagtcatactattgttttgggtgtatttcaatctgtcaaaaaggttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   <  1:644638‑M1/139‑124 (MQ=255)
                                                                                                            tcaaagacttaacATAAAAGtataagtcatactttagttttgggtgaaattcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   <  1:356500‑M1/137‑124 (MQ=255)
                                                                                                                 tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa              <  2:90339‑M1/143‑129 (MQ=255)
                                                                                                                  aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa             >  1:94897‑M1/1‑14 (MQ=255)
                                                                                                                    ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgaacagtcaaaataactcaccgtaaata           >  1:169406‑M1/1‑12 (MQ=255)
                                                                                                                         aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtagataatcat      >  1:452648‑M1/1‑7 (MQ=255)
                                                                                                                         aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacagtaaataattaa      >  2:72529‑M1/1‑7 (MQ=255)
                                                                                                                             aTGtataagtcatacttttgttttgggtgtatttcgatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt                                          >  2:513938‑M1/1‑3 (MQ=255)
                                                                                                                             aTGtataagtcatacttttgttttgggtgtatttcgatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt                                          <  1:513938‑M1/103‑101 (MQ=255)
                                                                                                                             aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtacataatcatctgc  >  2:199953‑M1/1‑3 (MQ=255)
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ATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978375‑1978642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: