New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1097007 =72 (0.990)5 (0.070) 5/276 10.2 6.6% intergenic (+178/+558) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097172 = NA (NA)intergenic (+343/+393) ycdU/serX putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTT  >  NC_000913/1097031‑1097293
                                                                                                                                             |                                                                                                                         
gggtgggATTCACTCTCTTCTCCCGCCACGCGGGCGCCCTGCTCACCACGTTCGCAGTATCTCCAGCTGGCCGTCCCGAGGCTTCGACGCTCGCTCAGGGGTTCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGccc                                                                                                                          <  2:151910/143‑1 (MQ=255)
gggggggATTGGCTCGCTGCGCTCGCCCGGCGGGCGGCCCGCTGACTGCGTTCGCGGTCTGTCCACCTGGCTGGCGCCAGTTGTCGGCCCGCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAGAAGccc                                                                                                                          <  2:798855/143‑1 (MQ=11)
          gACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTGACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt                                                                                                                <  1:1189652/143‑1 (MQ=25)
           aCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCCCCCCGCTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTa                                                                                                               <  1:1159694/143‑1 (MQ=25)
              cgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGAGCTTCTCATCCCCCCGGTGTGTGCAACACACGAAAAAAAAGCCCGTACTTTCGTACGa                                                                                                            <  2:358141/143‑1 (MQ=25)
               gcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                           <  1:139965/143‑1 (MQ=25)
               gcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTCTCCAACTGGCTGTCGCCAGTTGTCGACCCGCGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                           <  1:97128/143‑1 (MQ=255)
                     ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAACAAAGCCCGTACGGCAGTACGAGctctcc                                                                                                     >  2:1101540/1‑141 (MQ=11)
                           cTGCGGGCAGCCCGCTCACTGCGTTCGCGGGCTGTCCAACTGGCTGTCGCCAGTGGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                               <  1:382100/143‑1 (MQ=255)
                                ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                          <  2:785019/143‑1 (MQ=35)
                                 gCAGCCCGCTCACGGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGc                                                                                         <  1:556893/143‑1 (MQ=25)
                                        gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTACATATGGCGGtcggg                                                                                  >  1:329938/1‑139 (MQ=255)
                                             cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTTGTCTCCCGGACGGTGCTGCTCCCCCCGAGAGCTACTCCGACTAACAAAAAAAAAGCCTGCACGTCGGTATGAGCATTTCTTTAAATATGGCGGTGAggggggg                                                                             <  2:607433/143‑1 (MQ=2)
                                               gCGTTCATGGTCTGTCAAACTGGTTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                                                           <  1:654789/143‑1 (MQ=255)
                                               ccGTTCACGTCCTGCCCAACTGGCGGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCGCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                                                           <  1:848368/142‑1 (MQ=11)
                                                                  cTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                               >  2:1244482/1‑104 (MQ=38)
                                                                     gCTGTCGACAGTTGACGGCCCGCGGGCGGGGCTGCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGc                                                     <  1:157870/143‑1 (MQ=11)
                                                                      cTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt                                                                                                                >  1:793928/1‑83 (MQ=40)
                                                                       tGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                                                             >  2:699072/1‑101 (MQ=38)
                                                                           gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGGTTGACTCGCTTCGCTCGCCCTGCGGGCAg                                               >  1:1288110/1‑143 (MQ=21)
                                                                           gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAACCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg                                               >  1:530244/1‑143 (MQ=25)
                                                                                  gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                           <  2:375108/92‑1 (MQ=39)
                                                                                  gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                           >  1:375108/1‑92 (MQ=39)
                                                                                    cggccctcGGTCGGGGCCTCTCAGCCCCCCGGTGTGTTCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc                                      <  1:408289/140‑1 (MQ=11)
                                                                                     ggccccgGGGCGGGGCTTCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                     <  1:918929/141‑1 (MQ=255)
                                                                                     gccccccGGTCCGGGCTCCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                     <  1:148175/141‑1 (MQ=255)
                                                                                     gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc                                      <  2:442599/142‑1 (MQ=34)
                                                                                     gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc                                      >  1:442599/1‑142 (MQ=35)
                                                                                      ccccccGGCCGCGGCTGCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                    <  1:673248/142‑1 (MQ=11)
                                                                                      aCCCCCGCGCGGGGCGGCTCGGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                    <  1:556548/143‑1 (MQ=11)
                                                                                                ggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg                                                   >  1:503666/1‑118 (MQ=32)
                                                                                                ggggCTTCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                          <  1:1293185/143‑1 (MQ=17)
                                                                                                ggggCGCCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                          <  1:1235417/143‑1 (MQ=17)
                                                                                                  ggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGACCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGGCGCCCGCTCCCTGCGGTCCCGGTCt                        >  1:541437/1‑143 (MQ=11)
                                                                                                     ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                     >  2:1179484/1‑143 (MQ=32)
                                                                                                        tcATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa                  <  1:79847/143‑1 (MQ=32)
                                                                                                             cccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc             >  1:844930/1‑143 (MQ=32)
                                                                                                                 cGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                                                                   <  1:1299809/85‑1 (MQ=35)
                                                                                                                 cGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc         <  1:1188915/143‑1 (MQ=32)
                                                                                                                        tgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                               >  1:971271/1‑50 (MQ=38)
                                                                                                                        tgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGtt  >  2:718824/1‑143 (MQ=32)
                                                                                                                             tACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                                <  1:709008/92‑1 (MQ=33)
                                                                                                                             tACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                                >  2:709008/1‑92 (MQ=33)
                                                                                                                                             |                                                                                                                         
GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTT  >  NC_000913/1097031‑1097293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.