Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)81 (1.530) 57/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)81 (1.530) 55/284 0.0 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 154 total aligned reads displayed.

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628
                                                                                                                                              |                                                                                                                                              
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                >  1:73396‑M1/143‑143 (MQ=255)
 ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                               <  1:550722‑M1/2‑1 (MQ=255)
 ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                               <  1:243228‑M1/2‑1 (MQ=255)
  aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAACGCACAACAAACTa                                                                                                                                              >  1:789581/1‑143 (MQ=255)
  aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCGACTTTTAAACAGACAATTAACGCACAACAAACTa                                                                                                                                              >  2:438977/1‑143 (MQ=255)
   ggaaaacgcctaaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  1:882889‑M1/140‑143 (MQ=255)
   gataacgccttaaatggcgaagaaacggtctaaaataggctgattcaaggcatttacgggagaaaaaaacggcaaaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCtac                                                                                                                                             <  1:36662‑M1/4‑2 (MQ=255)
   aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTGTTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                             <  1:413356/143‑1 (MQ=255)
    gataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                            >  2:916684‑M1/139‑143 (MQ=255)
     ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggcccaaacctgaagaaatgaaatgactgagtcagccgagaagaatttccccgctaattcgcacctcccccacca                                                                                                                                           <  2:367803‑M1/6‑6 (MQ=255)
        acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtccgccgcaaacgttttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                        >  1:907680‑M1/135‑143 (MQ=255)
           aCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtg                                                                                                                                     <  1:741213‑M1/143‑9 (MQ=255)
              ggAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcga                                                                                                                                  <  1:375721‑M1/143‑12 (MQ=255)
               gAATAATCGAAATGGGACGCTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTACTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                 <  2:67590‑M1/143‑13 (MQ=255)
               aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcggaccttccCTAATTAAATACaaag                                                                                                                                 <  1:484064‑M1/16‑1 (MQ=255)
               aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                 <  1:746787‑M1/16‑1 (MQ=255)
                  tggcgaagaaacagtctaaataggctgattcaaggcatctacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                              >  2:557237‑M1/125‑143 (MQ=255)
                   ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                             >  2:846293‑M1/124‑143 (MQ=255)
                    gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                            <  1:302496‑M1/21‑1 (MQ=255)
                     tCGAAATGGGATGTTGCGCACAGTAAAAAAAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                           >  1:655705‑M1/1‑125 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGgcc                                                                                                                          <  1:289919‑M1/23‑2 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                          <  1:607391‑M1/23‑1 (MQ=255)
                       gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATCCACTACCAGCTACGCCATTTTTAACCAGACACTCCCCGCACAACCAACTAAggcaggtgcgaacacatccc                                                                                                                         >  1:879371‑M1/1‑123 (MQ=255)
                              gATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtacctgaaatg                                                                                                                  >  1:449681‑M1/1‑116 (MQ=255)
                               aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                 <  1:231500‑M1/143‑29 (MQ=255)
                                   tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                             <  2:722322‑M1/143‑33 (MQ=255)
                                     ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                                                                                                           <  1:606464‑M1/38‑1 (MQ=255)
                                      gcACAGTCAAAATAACGCACCGTAAATAATCACCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                          <  1:317714‑M1/143‑36 (MQ=255)
                                       cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                         <  2:640184‑M1/143‑37 (MQ=255)
                                        acaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggacggtgcgaacaagtccctgatatgagatcatgtt                                                                                                        >  1:566299‑M1/1‑106 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                       >  2:392796‑M1/102‑143 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgctaa                                                                                                       <  1:128851‑M1/42‑1 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                      >  2:321122‑M1/101‑143 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTAAATACAAAGAAAGGCAACAATCAActtaatgttaaa                                                                                                      <  2:511810‑M1/43‑2 (MQ=255)
                                          ctgattcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                      >  2:542374‑M1/101‑143 (MQ=255)
                                             cAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca                                                                                                   <  2:589065‑M1/143‑43 (MQ=255)
                                                caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATg                                                                                                >  2:829058‑M1/95‑143 (MQ=255)
                                                aaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                >  2:944744‑M1/1‑98 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcaCTAATTAAATACAAAGAAAGGCAACACACAACATAATGCGAATGAAATGt                                                                                               <  2:372277‑M1/50‑1 (MQ=255)
                                                  tAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                              >  2:246338‑M1/1‑96 (MQ=255)
                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCAACTTACTGTTAATGAAATGtt                                                                                              <  1:485494‑M1/51‑1 (MQ=255)
                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                              >  1:632299‑M1/93‑143 (MQ=255)
                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                              <  1:893300‑M1/51‑1 (MQ=255)
                                                    gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                            <  1:829919‑M1/53‑1 (MQ=255)
                                                    gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgattattcgcaccttccCTAATTAAATACACAGAAAGGCACCAGTCAACTTAATgctactgaactgctta                                                                                            <  2:233093‑M1/53‑8 (MQ=255)
                                                     cattgacgggagaaaaaatcggctcaaacaggaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                           >  1:394160‑M1/90‑143 (MQ=255)
                                                     cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAAAAGATAAGATATATTTAAACAGACAATTACCGCAAAACAAACTAAggaaggtgcgaacaagtacctgctatgagatcataattgtcatctggagc                                                                                           >  2:392498‑M1/1‑93 (MQ=255)
                                                      atttacgggagaaagaatcggctcaaccgtgaagcaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                          >  2:642983‑M1/89‑143 (MQ=255)
                                                        ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                        >  2:532856‑M1/87‑143 (MQ=255)
                                                         ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                       >  2:596311‑M1/1‑89 (MQ=255)
                                                             ggagaaaaaatcggctcaaacatgaagaaatgagatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACCATCAACTTAATGTTAATGAAATGTTTTACATATAtt                                                                                   <  2:431973‑M1/62‑1 (MQ=255)
                                                                taatCATCTTCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                <  1:716978‑M1/143‑62 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                             >  1:73749‑M1/76‑143 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                             >  2:20240‑M1/76‑143 (MQ=255)
                                                                     aatctgctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                           >  1:10486‑M1/74‑143 (MQ=255)
                                                                       cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                         <  1:867463‑M1/143‑69 (MQ=255)
                                                                         gCTATAAATAATCACTTTCATGCAATACCAGTTAAGCTGTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgggaacacgtccctgatatgagatcatgtttgtaatctggagcgatagaacagggttcctcat                                                                       >  1:414921‑M1/1‑73 (MQ=255)
                                                                         gCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                       <  2:655705‑M1/143‑71 (MQ=255)
                                                                         gCTATAAATAATCACTTTCATGCAATACCAAATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                       >  2:148209‑M1/1‑73 (MQ=255)
                                                                          gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTa                                                                      <  2:495996‑M1/75‑1 (MQ=255)
                                                                           tataAATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                     <  1:8452‑M1/143‑73 (MQ=255)
                                                                             taaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcactgatatgagattatattagtactcagtagtcgtagaacagggttcaacgtgagt                                                                   >  2:234337‑M1/1‑69 (MQ=255)
                                                                             caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATg                                                                   >  1:248975‑M1/66‑143 (MQ=255)
                                                                              aaacatgaagaaatgaaatgactgagtcagcggagaagaatttccccgcttattcgcgccttacCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATGTTTTAACCACTTGTTTAGTGc                                                                  <  1:834631‑M1/79‑1 (MQ=255)
                                                                                  aatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca                                                              >  1:924047‑M1/1‑64 (MQ=255)
                                                                                   atCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                             <  2:221369‑M1/143‑81 (MQ=255)
                                                                                   agctcgttcatgcaATGCCAGATAAGCTATTTTTAAGCAGACACTTGCGGCACATCACACTAAggaaggtgcgaagaagtacctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                             <  2:287430‑M1/137‑81 (MQ=255)
                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaccaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaac                                                            >  2:901721‑M1/1‑62 (MQ=255)
                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                            >  2:614382‑M1/1‑62 (MQ=255)
                                                                                     aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                           <  1:314723‑M1/86‑1 (MQ=255)
                                                                                      aCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggacggtgcgcaccagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                          >  1:598237‑M1/1‑60 (MQ=255)
                                                                                      aCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacacgtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                          >  1:207325‑M1/1‑60 (MQ=255)
                                                                                       gcgtcatGCAAGACCAGATAGGCTATTTTTAAACAGACACTTGCCGCACAACAAACGAAggaaggtgcgaacaagtcgctgatatgagatcatggttgtcatctggagccatagaacagggttcatcatgagtcatcaactta                                                         <  2:901080‑M1/140‑85 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                        >  2:807115‑M1/1‑58 (MQ=255)
                                                                                          atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                      <  2:142754‑M1/91‑1 (MQ=255)
                                                                                           tgaaatgactgagtcagccgagaagaacttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAACCAGTac                                                     >  1:332150‑M1/52‑143 (MQ=255)
                                                                                            aTGCAAGACCAGATGAGCTAATTTTAAACAGACACGTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                    <  1:132642‑M1/143‑90 (MQ=255)
                                                                                               cAATACCAGTGAAGCTCTTTTTAAACAGACACTTTCCGCCCAACAAACTACggaatgtgtgtacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                 <  2:250503‑M1/143‑93 (MQ=255)
                                                                                                   aCCCGATAAGCGATTTTTAAAGAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                             <  1:528137‑M1/143‑97 (MQ=255)
                                                                                                    tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                            >  2:606464‑M1/43‑143 (MQ=255)
                                                                                                    cgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACtatttcc                                            >  2:706580‑M1/43‑141 (MQ=255)
                                                                                                      agtcagccgagaagaatttccccgcggattcgcaccttccCTAAATAAATACAAAGAAAGGCAACAATCAACGTAAGGTTAATGAAATGTTTTACATATATTAACCACGTGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                          >  2:481893‑M1/41‑143 (MQ=255)
                                                                                                      agtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                          >  1:111825‑M1/41‑143 (MQ=255)
                                                                                                              tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                  >  1:288486‑M1/1‑36 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                 <  1:403285‑M1/143‑109 (MQ=255)
                                                                                                                gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAt                                >  2:538840‑M1/31‑143 (MQ=255)
                                                                                                                  agaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAGAAATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACattg                              <  2:571130‑M1/115‑2 (MQ=255)
                                                                                                                     aaaCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                           <  2:535842‑M1/143‑115 (MQ=255)
                                                                                                                         aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg                       >  2:864586‑M1/1‑25 (MQ=255)
                                                                                                                          cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                      >  2:713479‑M1/21‑143 (MQ=255)
                                                                                                                            cgcttattcgcaccttccCTAATTAAATACAAACAAAGGCTACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTCTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                    >  2:752774‑M1/19‑143 (MQ=255)
                                                                                                                               tcaccCCACACAAAACTAAggacggtgcgaacagttccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttcccttcgccgacagtgaattcagcagtaagcgccgtcagac                 <  2:789581‑M1/141‑125 (MQ=255)
                                                                                                                                    gCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa            >  1:180787‑M1/1‑14 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga        >  1:896148‑M1/1‑10 (MQ=255)
                                                                                                                                           tccCTAATTAAATACAAAGAAAGGCAACACCAACCGCGAGGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGa     >  1:645763‑M1/4‑143 (MQ=255)
                                                                                                                                            ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAt    <  1:928282‑M1/141‑1 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagccgtacgcgccgtcagaccagaaaagagattt   <  2:341401‑M1/143‑139 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt   <  1:596311‑M1/143‑139 (MQ=255)
                                                                                                                                              cTAAggaaggtgctcccaagtcccggagatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  <  1:252673‑M1/143‑140 (MQ=255)
                                                                                                                                              cTAATTAAATACAAAGAAAGGCCACAATGAACTTAATGTTAATGAAATGTCACACATATATAAAAAACTTCTGTTATTCGAAGAGTCAGTACACTATTTTCTTATAATTACATTTGAAATGATATGATCACCGGGAGtgattt  >  2:929601/1‑142 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.