New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227052	20 (0.380)	10 (0.200)	4/272	7.3	25.9%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 4038792	38 (0.750)					noncoding (1274/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038652‑4038867                                                                                                                                              |                                                                            aCGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAg                                                                           <  1:259885/143‑1 (MQ=255)  cGGGGATAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAAGAGAGCGGTTTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACAGAAGTAACGATAAAGc                                                                          >  1:36646/1‑143 (MQ=14)   ggggCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg                                                                         >  1:150335/1‑143 (MQ=255)    ggggTAAACCATGCACCGAGGCTGCGGGAGCGGCACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  1:888431/143‑1 (MQ=255)    gggCTAAACGATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:952801/143‑1 (MQ=255)    gggCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  1:371363/143‑1 (MQ=255)      gCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt                                                                      <  1:716605/143‑1 (MQ=255)       cTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAGGTAACGATAAAGCGGGTg                                                                     >  1:122758/1‑143 (MQ=255)       cTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg                                                                     >  1:295163/1‑143 (MQ=255)          aaCCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACTTAAGTAACGATAAAGCGGGTGaaa                                                                  >  2:637643/1‑143 (MQ=255)            ccATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGCTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                                                >  1:403546/1‑143 (MQ=255)              aTGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCGTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAGGcc                                                              >  1:888681/1‑143 (MQ=255)               ggCACGGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc                                                             <  1:250943/142‑1 (MQ=255)                gCACCGAAGCTGCGGCAGCGACACTGTGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCg                                                            <  1:531112/143‑1 (MQ=255)                gCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGACTGCTTACATGAGTAACGATAAAGCGGGTGAAAAGCCCg                                                            >  1:274050/1‑143 (MQ=255)                   ccGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                         >  2:232298/1‑143 (MQ=255)                         cttcGGTAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                   <  2:753486/140‑1 (MQ=255)                         cTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                   <  2:574529/143‑1 (MQ=255)                          tGCGGGAGCGACA‑TTTGTGGTGGTTGGGTGGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                  <  2:731603/143‑1 (MQ=11)                          tGCGGCAGCGAGACGCGGT‑GTTGTTGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                  <  1:164127/143‑1 (MQ=11)                               cAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATCATGGCACCGCCATATGTGCGCCTCGATACGTAAGTAACGATAAAGCGGGTGGAGAGCCCGCTCGCCGGAAGACCa                                             >  2:423184/1‑143 (MQ=9)                                aGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                            <  2:750844/143‑1 (MQ=255)                                  cGACGCTATGG‑GGTGTTTGGTAGGGGAGCGTTCTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  2:930706/143‑1 (MQ=11)                                  cGACACTATGG‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  1:328327/143‑1 (MQ=38)                                   gACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGCTAAAGCGGGTGAAAAGCCCGCTCGCCGCCAGACCAAggg                                         >  1:897296/1‑143 (MQ=255)                                    acacTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGt                                        >  1:925933/1‑143 (MQ=38)                                      acTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTCTGAACGTGTGCTGTGAGGCATGCTGGAGGCACCAGAAGCGCGAATCCCTACATAAGTAACGATAAAGCGCGCAAGAAGCCCCCCCCCCGCAACACCAAgcgccc                                      >  2:109310/1‑138 (MQ=2)                                        tATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCACGGGTGCCt                                    >  2:206065/1‑143 (MQ=25)                                              gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGCGGTCTCCGAACTCCGAATGCTGACATAAGTAACGATAAAGCGGGTGACAAGCCCGCTCGCCGGAAGCCCAAGGGATCCTGTCCa                               >  1:342071/1‑143 (MQ=11)                                                tgttgGTGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACTATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                             <  1:107293/143‑1 (MQ=12)                                                tggtgGGTAGGGGGGCGTTCTGTAGGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                             <  2:605705/140‑1 (MQ=12)                                                 gtgtggTAGGGGAGCGGTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg                            <  2:31980/139‑1 (MQ=17)                                                  ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAACGGTTCCTGTCCAACGt                           >  2:784254/1‑143 (MQ=17)                                                        aGGGGAGCGTTCTGTAAGCTCGTGAAGGTGTGCTGTGAAGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGACAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                     <  1:660471/143‑1 (MQ=255)                                                        aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                     >  1:928085/1‑143 (MQ=32)                                                          gggAGCGTTCTGTGAGCGTGTGATGGTGTGCTGTGAGTCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                   <  2:567319/143‑1 (MQ=255)                                                          gggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                   <  1:609341/143‑1 (MQ=32)                                                               cggtCTGGAAGCTTGTGACGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg              <  2:31806/140‑1 (MQ=255)                                                               cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg              >  2:318567/1‑143 (MQ=32)                                                                gtgcTGTAAGCCTGTGAACGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg             <  2:667624/140‑1 (MQ=17)                                                                  taggTAAGGCTGTGAAGGGGTGCGGTGAGGCATGCGGGAGGGAGCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTg           <  1:775359/140‑1 (MQ=11)                                                                         gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCCACGTGAATCGGGGCAGGGTGAGTCGAc    >  2:915539/1‑143 (MQ=17)                                                                         gCCTGTGAAGGTGAGCTCTTTTGCATTCTGGAGGTAGCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc    <  2:150335/143‑1 (MQ=11)                                                                           cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc  <  1:318567/143‑1 (MQ=32)                                                                                                                                              |                                                                            ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038652‑4038867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.