Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1209603	1209618	16	39 [0]	[0] 56	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGG  >  NC_000913/1209479‑1209761                                                                                                                                             |                                                                                                                                               agatgcttttgcggcattccccccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt                                                                                                                                              <  1:331230‑M2/3‑1 (MQ=255)   atgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt                                                                                                                                            >  2:430945‑M2/139‑143 (MQ=255)            cggcagtccacccccactgaatgattaccgattgctcaataccaccaatcatacccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATg                                                                                                                                   <  2:883148‑M2/14‑1 (MQ=255)              gcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa                                                                                                                                 <  1:430945‑M2/16‑1 (MQ=255)               cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag                                                                                                                                <  1:495518‑M2/17‑1 (MQ=255)                   ccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt                                                                                                                            >  2:603609‑M2/123‑143 (MQ=255)                       ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa                                                                                                                        <  2:425714‑M2/25‑1 (MQ=255)                        cccactggatgattactggttgctgaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa                                                                                                                       <  1:867514‑M2/26‑1 (MQ=255)                                       ctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt                                                                                                        >  1:418799‑M2/103‑143 (MQ=255)                                          attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                                     >  2:775134‑M2/100‑143 (MQ=255)                                           ttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTg                                                                                                    >  1:762060‑M2/99‑143 (MQ=255)                                            tgctcaataccaccaatcataaccggtgtagcacagagactggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                   <  2:922208‑M2/46‑1 (MQ=255)                                             ctccaataccaccaatcataaccggtatagctatgaaacccgtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                                  <  2:603311‑M2/47‑1 (MQ=255)                                               tcaataccaccaatccttgccggtgtagctatgaaatcggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctaccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                                <  2:150758‑M2/49‑1 (MQ=255)                                               tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                                >  1:758125‑M2/95‑143 (MQ=255)                                               tcaataccaccaatcataaccggtatagctatgaaaccagtgcgtcctaatgtagccgttgctgcatttagtttttctccttctcccaaaccaaCGTTTATGAAAATGAACAAATAACCAGCACATGGCATCATTCATACttt                                                                                                >  2:40317‑M2/95‑143 (MQ=255)                                                 aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatatagccgttgctgcattgagttttgctccttcacccaaaccaaCGATTATGCAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                                                              >  2:672353‑M2/93‑143 (MQ=255)                                                      caccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGTTACCAgg                                                                                         >  2:940939‑M2/88‑143 (MQ=255)                                                        ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                       <  1:399392‑M2/58‑1 (MQ=255)                                                           atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAACTGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                                    <  2:408038‑M2/61‑1 (MQ=255)                                                            tcataaccggtagagctatgagactggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGata                                                                                   <  2:317330‑M2/62‑2 (MQ=255)                                                                aatcgtgatagctatgaatccggtgcgtcctaatgtagccgttgctgcattgagttttgcttcttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                               <  2:543085‑M2/66‑1 (MQ=255)                                                                aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                               <  1:910360‑M2/66‑1 (MQ=255)                                                                aaccgctatagctatgcaacgggtgcgtcctgatgtagcagttgctgcattgagttttgctccttctccgaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                               <  2:623699‑M2/66‑1 (MQ=255)                                                                 accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                              <  2:590847‑M2/67‑1 (MQ=255)                                                                   gggtatagctatgaagccggggggccctaatgtagccgttgctgcattgagttttgctccttctcccaaaccagCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                                            <  2:4833‑M2/69‑1 (MQ=255)                                                                   cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                                            <  1:664315‑M2/69‑1 (MQ=255)                                                                        tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTAt                                                                       >  2:86147‑M2/70‑143 (MQ=255)                                                                          gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTAAACAGGGGGATTTAACATGCTTATTg                                                                     >  1:191015‑M2/68‑143 (MQ=255)                                                                           ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGAGATTTAACATACTTATAgg                                                                    >  1:762497‑M2/67‑143 (MQ=255)                                                                            tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTGCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                   >  2:673400‑M2/66‑143 (MQ=255)                                                                            tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                   <  1:909138‑M2/78‑1 (MQ=255)                                                                                   ccggtgcgtcctaatgtagctgttgctgcattgtgttttgttccaccacccaaaccaaCGTTTATGACAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                            <  1:435898‑M2/85‑1 (MQ=255)                                                                                          ggcctaatggagccgttgctgcattgagtgttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc                                                     <  1:280280‑M2/92‑1 (MQ=255)                                                                                             ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAGcaac                                                  >  2:127890‑M2/49‑143 (MQ=255)                                                                                             caaatggagccgttgctgcattgagtttcgcccctcctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                  <  1:32277‑M2/95‑1 (MQ=255)                                                                                                 tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                              <  1:775134‑M2/99‑1 (MQ=255)                                                                                                  gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                             >  1:671174‑M2/44‑143 (MQ=255)                                                                                                     gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                                          >  1:509911‑M2/41‑143 (MQ=255)                                                                                                      ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                                         <  1:722051‑M2/104‑1 (MQ=255)                                                                                                      ccgttgctgcattgagttttgctccttatcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCa                                         >  1:493733‑M2/40‑143 (MQ=255)                                                                                                        gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGGTTTAACATGCATATTGGCTATGTACGCGTATCAACAAATCACCAGa                                       >  2:275763‑M2/38‑143 (MQ=255)                                                                                                            ctgcattgagttttgctccttctcccaaaccaaCGATTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGCCCAgaaccc                                   >  1:64387‑M2/34‑141 (MQ=255)                                                                                                             tccattgcgttttgctccttctcccaaaccaaCCTTTATGAAAATAAAGAACTAACAAGCAAATGTCATCATTCCTTCTGTTACCAGGGGAATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca                                  <  2:381598‑M2/111‑1 (MQ=255)                                                                                                              gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg                                 >  2:355344‑M2/32‑143 (MQ=255)                                                                                                               cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                                <  1:196528‑M2/113‑1 (MQ=255)                                                                                                                 ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc                              >  1:501515‑M2/29‑143 (MQ=255)                                                                                                                     gttttgctcctcctcccaaaccaaCGTTTATAAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa                          <  2:361725‑M2/119‑1 (MQ=255)                                                                                                                           ctccttctcccaaaccaaCGTTTATGAAACTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGCACACAGATCTACCACGTaa                    >  1:307695‑M2/19‑143 (MQ=255)                                                                                                                           ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa                    >  2:261490‑M2/19‑143 (MQ=255)                                                                                                                            tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGCCGATGTACGCGTATGAACAAACGACCAGAACACAGATCTACCACGTAAt                   >  2:714542‑M2/18‑143 (MQ=255)                                                                                                                               ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTAACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAGgcg                >  1:597965‑M2/15‑143 (MQ=255)                                                                                                                                 ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt              >  1:933957‑M2/13‑143 (MQ=255)                                                                                                                                     caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACCACgtaatgcgcaaaac          >  2:902642‑M2/9‑138 (MQ=255)                                                                                                                                          caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc     >  1:252117‑M2/4‑143 (MQ=255)                                                                                                                                             cGTTGATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTGTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAAGAAATGACGAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAgg  <  2:888041/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGG  >  NC_000913/1209479‑1209761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑