New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35461236 (0.940)3 (0.080) 3/270 5.5 8.2% noncoding (14/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354646 33 (0.910)noncoding (48/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/354507‑354612
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  <  NC_000913/354646‑354509
                                                                                                                                                                                                                                                    
TTTGCCAAGGACGCGGTCCTGGAGATCTGACGACCATGGATGATCCTGCGTCGTTGGCTCAGATCCGCCAGGCGATGCAAGCGTAGCTTATTGTCGGATGCGTCGCGCGGTGCATCGGCACACAGTGCCGGATGCACCGCGCG                                                                                                       <  2:695137/143‑1
   gcgcgGGACGCGAGCCTGGAGATCGGACGACCATTGATGGCCCTGCGTCGTTGGATCGGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACG                                                                                                    <  2:682294/138‑1
       AGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAATAGTAGGTTATTGTCGGATGCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATC                                                                                                <  1:546490/143‑1
                                                                                                   GCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGCTCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCG    >  1:629700/1‑143
                                                                                                     GTCGCATCAGGCATCGGCACACAGTGCCGGAGGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  >  1:666183/1‑143
                                                                                                                                                                                                                                                    
TTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/354507‑354612
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  <  NC_000913/354646‑354509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.