New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34000440 (1.040)3 (0.080) 3/270 5.5 7.3% noncoding (248/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 340015 38 (1.040)noncoding (259/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCT  >  NC_000913/339868‑340145
                                                                                                                                        |                                                                                                                                             
gCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGt                                                                                                                                         >  1:401100/1‑143 (MQ=255)
gCCTGATCCGGCCTACGAATGGCGCAACAATCTGGAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGt                                                                                                                                         <  2:446544/143‑1 (MQ=255)
        cGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATc                                                                                                                                 >  1:221007/1‑143 (MQ=255)
         ggCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                                >  1:669659/1‑143 (MQ=255)
                    ggtgcAATAATCTGTAGGCGTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                     <  1:459753/140‑1 (MQ=255)
                    ggCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                     >  1:443777/1‑143 (MQ=255)
                       gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCCCCAGGCATTTGTCActg                                                                                                                  >  2:105259/1‑141 (MQ=255)
                                      ccTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggcg                                                                                                   <  1:554024/143‑1 (MQ=255)
                                       cTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGAACgcggcgc                                                                                                  >  2:217902/1‑142 (MQ=255)
                                              gCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGcc                                                                                           <  2:401100/143‑1 (MQ=255)
                                                 tAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGCGGCGCGAGCATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGGTGCGGCGTGCACGCCttc                                                                                        >  1:528795/1‑142 (MQ=255)
                                                      cctCAGGCATGTGCCGCCCGTGCCGGATGCGGCGTGGAAGCCTTCTCGGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                   <  2:76874/141‑1 (MQ=14)
                                                          aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTCGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGGGAACCCCGTCGCCGGccca                                                                               >  2:129889/1‑141 (MQ=17)
                                                          aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                               >  1:411455/1‑143 (MQ=255)
                                                           ggCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCGTCAGGCATTTGTCACCATTGCCGGACGCGGCGTGAACGCCTGATCCGGCCtcc                                                                              >  2:442657/1‑141 (MQ=255)
                                                            gCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACg                                                                             >  2:29932/1‑143 (MQ=255)
                                                               tttGCCCCCTCTGCCGGATGCTGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGt                                                                          <  2:412685/143‑1 (MQ=255)
                                                                ttGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGGCTTATCCGGCCTACGAGTg                                                                         >  1:607232/1‑143 (MQ=255)
                                                                  ggtgccgcTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGTGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGgc                                                                       <  2:31284/136‑1 (MQ=255)
                                                                          tGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGcgcgcggat                                                               >  1:45932/1‑138 (MQ=255)
                                                                           gCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCCGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAAtt                                                              >  1:199717/1‑143 (MQ=255)
                                                                              ggATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTa                                                           <  1:60971/143‑1 (MQ=255)
                                                                               gATGCGGCGTGGTCGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATGAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                          <  1:699989/143‑1 (MQ=255)
                                                                               gATGCGCCGTCGCCCCCCTATCCGGCCTGTGTTTGTCGAGAGAATCTTTAGGCCTGATAAGCGTAGCGCACCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                          <  2:216513/143‑1 (MQ=14)
                                                                                        tGGACGCCCTATCCGGCCCACGAGTGGAGCGAGAATCCGTAGGCCTGATAAGCGTAGCGCCTCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                 <  1:134480/143‑1 (MQ=17)
                                                                                        gggtcGCCTTAGCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGTATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                 <  2:342461/139‑1 (MQ=255)
                                                                                          gACGCCTTATTCGGGGTGCGACTGGCGCGAGAATCTGTAGGCCGGATAAGCGTAGCGCATCAGGCATTTGTCACCGTTGCCGGATGCGGCGTGAACGCCTTGGCCTTCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                               <  2:148613/143‑1 (MQ=14)
                                                                                          gACGCCTGATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                               <  1:425995/143‑1 (MQ=255)
                                                                                             gccctctCCGGCCTACGAGTGGCGCAAGAATCTGTAGGCCTGGTAAGCGTAGCGCATCAGGCATTGGTCACCATTGCCTGGTGCGGCGTGAACGGCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTa                                            <  1:98170/137‑1 (MQ=14)
                                                                                               cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCGGGCATTCGGCCCCATTGCCGGATGCGGGGAGACCGCCTTATCCGGCCTACGAGGGGCGCGCGATTTGTGGGGCCGCTACGCGTCgc                                          >  2:260061/1‑143 (MQ=14)
                                                                                               cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGGAGGCCTGATAAGCGTAgc                                          >  1:647446/1‑143 (MQ=255)
                                                                                                                    gcgcGAATCTGTAGGCCTGATAGGCGTAGCGCATCAGGCATTTGTCACCTTTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTg                     <  2:153419/143‑1 (MQ=255)
                                                                                                                      gagaATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGt                   <  1:117776/143‑1 (MQ=255)
                                                                                                                          aTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATAGTAAGCCTGATAAGCGTAGCGCACCAGGCAGTCTGGCGTTGGTCAtc               >  2:269642/1‑142 (MQ=255)
                                                                                                                           tCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCCTCAGGCAGGCTGGCGTTGGTCATaa              >  1:70743/1‑143 (MQ=255)
                                                                                                                               tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGCCTGGTAGGCCTGATACGCGTCGCGCATCCGGCAGGCTGGCGTTCGTCACAAcccc          >  2:444324/1‑143 (MQ=17)
                                                                                                                               tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAAcccc          >  1:578672/1‑143 (MQ=255)
                                                                                                                               tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGCAGCGCATCAGGCAGTCTGGCGTTGGTCATAAccgc          >  2:408830/1‑141 (MQ=255)
                                                                                                                                       aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGGGGCGTGAACGCCTTATCCGGCCTACGGGTGGAGCGAGAATTGTAGGCCTGACAAGAGTGGCGCATCAGGCAGCCTGGCGGTGGTAGGACCCCCGTCACCct  >  2:163140/1‑143 (MQ=14)
                                                                                                                                       aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCGTGGCGCGAGGATTGTAGGCCTGATAAGCGTAGAGCGTCAGGCAGACTGGAGGTGGTCAGAACGCCATAACCct  >  2:261898/1‑143 (MQ=17)
                                                                                                                                        |                                                                                                                                             
GCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCT  >  NC_000913/339868‑340145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.