Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)63 (1.640) 47/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)55 (1.430) 33/284 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 117 total aligned reads displayed.

AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631
                                                                                                                                              |                                                                                                                                              
ggagaacgccttaactggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                >  1:598385‑M1/140‑143 (MQ=255)
 gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                               <  2:324876‑M1/5‑1 (MQ=255)
  gtaacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                              >  2:19534‑M1/138‑143 (MQ=255)
   taacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttcaccgcttattcgcgccttcaCCAATTa                                                                                                                                             <  2:291818‑M1/7‑1 (MQ=255)
    aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                            <  1:444567‑M1/8‑1 (MQ=255)
       gccttaatgggcgaagaaacggtataaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgatatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                         >  2:346964‑M1/133‑143 (MQ=255)
       gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttacCTAAGTAAATa                                                                                                                                         <  2:224823‑M1/11‑1 (MQ=255)
       gccttaaatggcaaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaccatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                         >  1:298224‑M1/133‑143 (MQ=255)
       aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                         <  2:626794‑M1/143‑8 (MQ=255)
        cctgaaagtgcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAc                                                                                                                                        >  1:145552‑M1/132‑143 (MQ=255)
         cAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgc                                                                                                                                       <  1:32606‑M1/143‑10 (MQ=255)
           taaatggcgaagaaacgggctaaataggctgagtcaaggcatttacgggagaaaatatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACaaa                                                                                                                                     >  2:528814‑M1/129‑143 (MQ=255)
              atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaa                                                                                                                                  <  2:173313‑M1/18‑1 (MQ=255)
                    gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACATACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                            >  1:424189‑M1/1‑123 (MQ=255)
                    aagaagcggtataactaggctgactcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                            >  2:39193‑M1/120‑143 (MQ=255)
                    aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                            <  1:180581‑M1/24‑1 (MQ=255)
                     agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaac                                                                                                                           >  1:383716‑M1/119‑143 (MQ=255)
                         gggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                       <  1:269986‑M1/143‑26 (MQ=255)
                           ggtctacataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                     >  1:16692‑M1/113‑143 (MQ=255)
                           ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                     >  2:90793‑M1/113‑143 (MQ=255)
                            aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                    <  2:8595‑M1/143‑29 (MQ=255)
                                    cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                            <  1:525793‑M1/143‑37 (MQ=255)
                                    cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                            >  2:443921‑M1/1‑107 (MQ=255)
                                      gctgattcaagggatgaacgggagaagaagtcgggtcaaacatgaagagatgaaatgactgagtcagccgagaagaagttccccgcttgttcgcttgtgccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                          >  2:148401‑M1/102‑143 (MQ=255)
                                      gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                          <  2:102825‑M1/42‑1 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  1:577751‑M1/143‑39 (MQ=255)
                                      caGTAAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAGTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  2:223750‑M1/143‑39 (MQ=255)
                                        gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                                                                        <  1:241137‑M1/143‑41 (MQ=255)
                                          aatcaaggcatttacgggagaaaacaccggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                      >  2:62837‑M1/98‑143 (MQ=255)
                                           ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTGAATGTTAATGaaa                                                                                                     <  1:19759‑M1/47‑1 (MQ=255)
                                           tgcaaggcgtgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                     >  1:32831‑M1/97‑143 (MQ=255)
                                               aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                                 >  1:37270‑M1/93‑143 (MQ=255)
                                               aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                                 <  2:447368‑M1/51‑1 (MQ=255)
                                                aaCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAACTACTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                <  1:95208‑M1/143‑49 (MQ=255)
                                                   gttgacgggtgaagaaatcggctgaagcatgaagtaatgaaatgactgagtcagccgagaagaatttcccagcttattcgcaccttcgCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                             >  2:368404‑M1/89‑143 (MQ=255)
                                                    tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccATACTTAAATAAAAAGAAAGGCAAAAATCCACTTAATGTTAATGaaatgttctcaa                                                                                            <  2:69979‑M1/56‑6 (MQ=255)
                                                    cACCGTAAATAACCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                            <  1:309081‑M1/143‑53 (MQ=255)
                                                     aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                                                                           >  1:219800‑M1/1‑90 (MQ=255)
                                                      ccGTAAATCATCATCGGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                          <  2:151201‑M1/143‑55 (MQ=255)
                                                       acgggagaaaaaaccggctcaaacatgaagaaatgaaatgactgagccagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                         >  2:422739‑M1/85‑143 (MQ=255)
                                                        gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGCTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAcgcaggtgcgaacaagtccctgatatgagatcgtctttgtcatctgccgccataaa                                                                                        >  1:645181‑M1/1‑87 (MQ=255)
                                                        cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacgttccCTAATTAAATACAAAGAAAGGCAACAATAAACTTAATGTTAATTAAATATTTTACatata                                                                                        <  2:9096‑M1/60‑1 (MQ=255)
                                                         tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatatggagccatagaa                                                                                       >  1:311672‑M1/1‑86 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCCACTTAATGATAATGAAATGTCTTACatatat                                                                                       <  2:157509‑M1/61‑1 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                                                                       <  1:620882‑M1/61‑1 (MQ=255)
                                                           gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttcttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                     <  1:524272‑M1/63‑1 (MQ=255)
                                                           gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                     <  1:46918‑M1/63‑1 (MQ=255)
                                                              aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAAACACTTACCCCACAACCAACTAAggaaggtgcgaacaagtccctgatatgagattatgtttgtcatctggaccactcgaacagtg                                                                                  >  2:283060‑M1/1‑81 (MQ=255)
                                                                tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtagcgcaactggagggcgagaacagggtt                                                                                >  2:140013‑M1/1‑79 (MQ=255)
                                                                aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                <  1:522934‑M1/68‑1 (MQ=255)
                                                                  aaacgcctcaaacaagaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                              >  1:27529‑M1/74‑143 (MQ=255)
                                                                            aataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                    >  1:40405‑M1/1‑67 (MQ=255)
                                                                              catgcacaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGATATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                  >  1:452503‑M1/62‑143 (MQ=255)
                                                                               atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                 >  1:324876‑M1/61‑143 (MQ=255)
                                                                                tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTAGTTTAATGCGgaga                                                                <  1:635797‑M1/84‑1 (MQ=255)
                                                                                  cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                              <  1:137635‑M1/143‑83 (MQ=255)
                                                                                   agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctttcCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                             >  2:647785‑M1/57‑143 (MQ=255)
                                                                                       atgatatgactgagccagccggagataatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                         >  1:123258‑M1/53‑143 (MQ=255)
                                                                                          tGCAATACCAGATAAGCTATTTTTAAACTGGAGCCAACCCCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg                                                      <  1:126672‑M1/143‑91 (MQ=255)
                                                                                             aaTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaccttaccttcgccg                                                   >  1:674983‑M1/1‑50 (MQ=255)
                                                                                             aaTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg                                                   >  1:107036‑M1/1‑50 (MQ=255)
                                                                                              aTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctagagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                                  <  1:29175‑M1/143‑95 (MQ=255)
                                                                                               actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAttt                                                 <  2:443137‑M1/99‑1 (MQ=255)
                                                                                                ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAtttt                                                >  2:20988‑M1/44‑143 (MQ=255)
                                                                                                ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAtttt                                                >  2:20033‑M1/44‑143 (MQ=255)
                                                                                                 tgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                               >  1:605538‑M1/43‑143 (MQ=255)
                                                                                                  gagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCt                                              >  2:622730‑M1/42‑143 (MQ=255)
                                                                                                   agtcagccgagaagaatttccccgcttaatagcacccgtgATTATTAAAGACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACATGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                             <  1:479374‑M1/103‑1 (MQ=255)
                                                                                                    gtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTta                                            >  2:570646‑M1/40‑143 (MQ=255)
                                                                                                              ttttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagagcaggtttgtgatctggagccatagaacagggttcatcatgagtcatcaacttagcttcgccgacggtgaattcagcagg                                  >  1:98444‑M1/1‑33 (MQ=255)
                                                                                                                gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                                >  1:204463‑M1/28‑143 (MQ=255)
                                                                                                                 tAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                               <  2:52473‑M1/143‑114 (MQ=255)
                                                                                                                   tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                             >  1:354181‑M1/25‑143 (MQ=255)
                                                                                                                      aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatcaggagccatagaacagggttcatcatgagtcatccacttaccttagccgaccgtgaattcagcacaaaacgccg                          >  2:75999‑M1/1‑25 (MQ=255)
                                                                                                                      aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatggttgtcctctgcagccagagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgagttcagcagtacgcgccg                          >  1:64615‑M1/1‑25 (MQ=255)
                                                                                                                       gACACTCACCGGATAACAAACCAAggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                         <  2:157538‑M1/143‑120 (MQ=255)
                                                                                                                        ccgcttattcgcacctttcCTAATTAAATACAAAGATAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAATCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtata                        >  2:548638‑M1/20‑143 (MQ=255)
                                                                                                                          gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                      <  1:527068‑M1/126‑1 (MQ=255)
                                                                                                                          acTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag                      >  2:623638‑M1/1‑21 (MQ=255)
                                                                                                                           cctacCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     <  2:121979‑M1/141‑124 (MQ=255)
                                                                                                                           cTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     <  1:477861‑M1/143‑124 (MQ=255)
                                                                                                                            gtcccgcaCCACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                    <  2:20687‑M1/140‑125 (MQ=255)
                                                                                                                                   acaacaAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa             <  2:336577‑M1/143‑132 (MQ=255)
                                                                                                                                        tccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGa        >  1:412828‑M1/4‑143 (MQ=255)
                                                                                                                                         ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAt       >  1:668379‑M1/3‑143 (MQ=255)
                                                                                                                                         atctaAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt       >  1:110357‑M1/3‑6 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     >  1:577147‑M1/1‑4 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     <  2:155433‑M1/143‑140 (MQ=255)
                                                                                                                                            taagtaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:461557‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:177669‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggctcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcatacgcgaaaagagcgtctc    >  2:513611‑M1/1‑3 (MQ=255)
                                                                                                                                            tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattga    <  1:447996/143‑1 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   <  2:572865‑M1/143‑142 (MQ=255)
                                                                                                                                             aaggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   <  1:85700‑M1/143‑142 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtatgcgccgtcagaccagaaaagagattttctt  <  2:424189‑M1/143‑143 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  <  1:604657‑M1/143‑143 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  <  1:290691‑M1/143‑143 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccaacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  >  1:548068‑M1/1‑1 (MQ=255)
                                                                                                                                              aggaaggtgcgaaagagtccctgatatgagatcatgtttgccatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  <  1:563512‑M1/143‑143 (MQ=255)
                                                                                                                                              aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATAATCACCGGGAGTgattgatt  <  2:612982/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.