New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	32 (0.830)	29/284	0.3	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292899‑1293168                                                                                                                                             |                                                                                                                                  aagATTTTTATCTGCTGCGCCCATTGTAGTAATCTCAAACGTATATTGTGGTGGTTTGCTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                 >  2:618104‑M2/2‑141 (MQ=255)    aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCCGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaa                                                                                                                              <  1:567935‑M2/143‑6 (MQ=255)           aGTGCTTCTCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                       >  1:70340‑M2/1‑131 (MQ=255)                  cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtactgactccaactgat                                                                                                                <  2:470437‑M2/143‑20 (MQ=255)                            agtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                      >  2:628567‑M2/1‑114 (MQ=255)                             gtaATTTCACACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttt                                                                                                     >  2:165326‑M2/1‑113 (MQ=255)                                   tgaactttatgttgGGGTTGTTTGTTGAGGTAATAATAGAGGCGTAGATGCAGTTGTGTAATAGCCAGGAATGTAAGGAATTCTAAAGTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                               >  2:642418‑M2/7‑107 (MQ=255)                                     aaaTTTATACTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATCGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                             >  2:100125‑M2/1‑105 (MQ=255)                                     aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                             >  1:304164‑M2/1‑105 (MQ=255)                                       aCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgtctccaacttattgatagtgttttatgttcaga                                                                                           >  1:192358‑M2/1‑103 (MQ=255)                                           atatTGGGGTTGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTTTGCATTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATGTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                       >  1:11003‑M2/1‑99 (MQ=255)                                                   gtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg                                                                               >  2:542036‑M2/1‑91 (MQ=255)                                                       ttgGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAGTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt                                                                           >  1:83238‑M2/1‑87 (MQ=255)                                                          gttgAGGTAATAATAGAGCTTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                        >  2:95396‑M2/1‑84 (MQ=255)                                                           ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAACTGTTCTTCAATTTGTGCCGggtaatgactcgaacttattgctagtgttttatgttcagataatgccagatgactttgtc                                                                       <  2:203197‑M2/143‑61 (MQ=255)                                                             gAGGGAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat                                                                     >  2:11826‑M2/1‑81 (MQ=255)                                                              aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatc                                                                    <  2:435114‑M2/143‑64 (MQ=255)                                                                 taataaTAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactctgtcatgcag                                                                 >  1:329379‑M2/1‑77 (MQ=255)                                                                    taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                              >  1:500516‑M2/1‑74 (MQ=255)                                                                         gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                         <  1:370858‑M2/143‑75 (MQ=255)                                                                               tAAATTCAGTTGTGCAATAGACAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                   >  1:699404‑M2/1‑63 (MQ=255)                                                                                agatgCAGTTGTGATATAGCCAGGAGTGTAAGGAATTCAAATTTGTTCTGTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagctcatgccctatgactttgtcatgcagctccaccgattttga                                                  >  2:437968‑M2/3‑62 (MQ=255)                                                                                aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgaatttga                                                  >  2:581792‑M2/1‑62 (MQ=255)                                                                                        ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                          <  2:106335‑M2/143‑90 (MQ=255)                                                                                          gtgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattggtagtgttttatgttcagataatgcccgatgactttgtcatgcagctccgccgattttgagaacgagagc                                        <  1:87501‑M2/143‑92 (MQ=255)                                                                                             cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgac                                     <  1:424851‑M2/143‑95 (MQ=255)                                                                                                   ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                               >  2:682061‑M2/1‑43 (MQ=255)                                                                                                          tGTAAGCAAGTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcctgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                        >  1:199777‑M2/1‑36 (MQ=255)                                                                                                             aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatcgtgttttatgttcagatcatgcccgatgactttgtcatgaagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                     <  1:105262‑M2/143‑111 (MQ=255)                                                                                                                            gTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttctgtcgctgccttgccaggtgccgcctca      >  2:248523‑M2/1‑18 (MQ=255)                                                                                                                                tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt  <  2:46447‑M2/143‑130 (MQ=255)                                                                                                                                tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgaatttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagacgtgccaggtgctgcttcagatt  <  2:8608‑M2/143‑130 (MQ=255)                                                                                                                                             |                                                                                                                                  CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292899‑1293168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.