| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1303239 = | 0 (0.000) | 30 (0.820) | 24/284 | 0.5 | 100% | coding (341/921 nt) | oppB | oligopeptide ABC transporter permease |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1303378‑1303239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG < NC_000913/1979270‑1979130 cccatcCAAAACGAGCGCAAATATCATGACTAATAATGGTGCAACCACAAGACTGTGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGT < 1:554629/137‑1CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGT > 1:362509/1‑143 TGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATG < 1:320824/143‑1 AAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTG > 1:434354/1‑143 AAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTACCATTTGGTGTTTTGTTTTAATGCGGCAATCACGCCAGCACGGTGCTGCTG > 1:536585/1‑143 AATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGGATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCC > 1:432023/1‑143 CAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACT < 1:380416/143‑1 gCATGACTCTTCATGGTGCAACCACACAACTGTGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATTCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTA < 2:608643/142‑1 ccCCACAAACCTGGGGGTAACACCCCCGGTCATTGCCAGCCCCCTCACGGTATAGTCCCACTTGGTGTCTTGTGTTAATGCGGCAATAACATCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG < 2:518631/141‑1 cACCACAAAACTGGGGATAACACCCCCGGTCATTGCCAGCCCCATCCCGGTATAGTCCCATTTGGTGTTTTGTTTTAATCCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG < 2:555431/142‑1 ACCACAAAACTCGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA < 1:177316/143‑1 agCCCCGGTCATTG‑CAGCCCCATCACGGTATAGTCCCATTTGGTGTTTGGTTTTAATGCGGTAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT < 2:585304/141‑1 AACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTAAGAAGTGGGTTTTGAGGTGCTCCAGTGGCTTCTGT > 2:652269/1‑143 AACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGATCTTAGATAATGGTTTTAGCGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > 1:490624/1‑143 AACCCCGGGCATTGCCGGCCTCATCACGGTATAGTCCCATGTGGTGTTTTGTTTTAATGCGGCAATATCGCCAGCACGGTGTTGCTGCCAACTTACTGCTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGCGGCTTCTGT < 2:66068/143‑1 cCCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCGATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT < 2:663587/142‑1 CCCGGGCATTGCCAGCCCCAGCGCGGTATAGTCCCGTTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC < 2:448524/143‑1 tcgTTGCCTGCTGCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATGTAGTGTATGATGGTGTTTTTGAGGTGCTCTAGTGGCTTCTGTTTCTATCA < 2:210284/140‑1 gCATTGTCAGCCCCATGACGGTGTAGTCCCATTTGGTGTTTTGTTTTAATGCGGCGATAACGCCAGCACGGGGATGCTGCCAACTTACTGGTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA < 2:244246/142‑1 TCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA < 1:116621/143‑1 TTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCGGTGGCTTCTGTTCCTATCAGCT > 2:354986/1‑143 ATAGTCCTATTTGGTTGGTTGTTTTAATGCGGCAATAACGCCAGCATGGTGATGGTGCCAACTGACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC < 2:218080/143‑1 cagTTGCTGTTTTGTCTTAATGCGCCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGG < 1:4478/140‑1 tTGTTTTGTTTTAATGGGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATTGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTG < 2:289361/142‑1 GTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGCCTTCGGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTG > 1:668694/1‑143 TGTTTTGTGTTAATGCGGCGATAACGCCAGCGCGGTGATGCTGCGAACGTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGC < 2:536585/143‑1 TTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACag > 2:635266/1‑141 AATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAA < 1:244109/143‑1 CAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCG > 1:145856/1‑143 ACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG < 1:541688/143‑1 CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1303378‑1303239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG < NC_000913/1979270‑1979130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |