New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	377368 =	NA (NA)	3 (0.090)	3/270	5.3	NA	noncoding (34/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	2139702 =	NA (NA)					noncoding (1/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAC  >  NC_000913/377235‑377509                                                                                                                                      |                                                                                                                                              gcgcgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                                                                                                      <  1:577783/143‑1 (MQ=255) gcgcgcTCAGCGCAGAAGAGCAGGATGAGGACGACCCGTATGCCGACGTCAAAGTGCCTGATGATTTGATGTGGTAACCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                                                                                                      <  1:72621/143‑1 (MQ=255)    cgcTCAGCGCAGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                                                                                                   <  1:251020/143‑1 (MQ=255)       tCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCg                                                                                                                                >  1:429842/1‑143 (MQ=255)       tCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCg                                                                                                                                >  1:426881/1‑143 (MQ=255)        cAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGa                                                                                                                               >  2:205576/1‑143 (MQ=255)              cGAAGAGCAGGATGACGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTa                                                                                                                         <  1:166003/143‑1 (MQ=255)                    ggaGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                                                                                                   <  2:149999/141‑1 (MQ=255)                        gaggAAGACGACCCGTATGCCGCCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                                                                                               <  1:531857/140‑1 (MQ=255)                              gacgacCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGAGtt                                                                                                         >  1:170758/1‑143 (MQ=255)                              gacgacCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCGACGGGTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                                                                         >  2:199250/1‑143 (MQ=255)                                    ccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgcc                                                                                                   >  1:382645/1‑143 (MQ=255)                                     cGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCATGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                                                                                                  <  1:364270/143‑1 (MQ=255)                                           ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                                                            >  1:376472/1‑143 (MQ=255)                                            cGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                                           >  1:268861/1‑143 (MQ=255)                                             gACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                          >  1:101983/1‑143 (MQ=255)                                              aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                         <  1:300142/143‑1 (MQ=255)                                                           tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATg                                                                            >  1:6123/1‑143 (MQ=255)                                                           tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTCACGGGCGACGGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCacg                                                                            >  2:297630/1‑141 (MQ=255)                                                              tgagTTGATGTGGTAACCGTGGGTATGTCGTGCGCGGCTGCCTGCTGCGACGCTCTGCGCGTCTTATGTGGCCTACGGTTGATGGGCGAAGTGTAGCCGGGAACATAGCCGCGTTTCGCATCCGGCAGTCGTGCGCCATGCCt                                                                         <  2:588209/143‑1 (MQ=255)                                                                 tttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCGACGGTTTATGGGCGAAGTGGAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCCTGCGCCGTGCCTGAt                                                                      >  1:253850/1‑143 (MQ=255)                                                                  ttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCCTCCGGCAGTCGTGCGACGTACCTggtc                                                                     >  2:71494/1‑140 (MQ=21)                                                                   tgctgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTGATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                                                                    <  2:441379/140‑1 (MQ=255)                                                                          gTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTCCACGCCGCATCCGGCAGTCGTGCGCCCTGCCACATGCGACGCtt                                                             >  2:429145/1‑143 (MQ=255)                                                                                    aTAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAcc                                                                                                                     <  2:118906/77‑1 (MQ=255)                                                                                    aTAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAcc                                                                                                                     >  1:118906/1‑77 (MQ=255)                                                                                          cctGCGCAGATGCCTGCTGCGCCGCTATGCGCGTCTTATCAGGCCTCCGGTTTATGGGCGAAGTGTAGCCCGGCTAAGGCGTTCCCGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAgg                                             <  2:500045/141‑1 (MQ=21)                                                                                                cAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCGTCCGGCAGTCGTGCGCCATGCCTGATGCGCCGCTTTGCGCGTCTTATCAGGCCTACg                                       >  1:446968/1‑143 (MQ=255)                                                                                                   aTGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCt                                    >  1:243950/1‑143 (MQ=255)                                                                                                     gccgggtGCGACGGGATGCGCGTCTGAGCAGGCCGACGGTGGATGGGCGAAGCGTCGGCCGGATCAGGCGGTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTa                                  <  2:133162/137‑1 (MQ=21)                                                                                                         gATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACggc                              >  2:522575/1‑142 (MQ=255)                                                                                                            gctaCGCTATGCCCCTCTCATCACCCCCACTCTTTATCGGCGCAGTGTAGCCCGGATAAGGCGTTCACGCCGCATCCGGCCGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGa                           <  1:78711/140‑1 (MQ=21)                                                                                                              gACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCAGCTGCGACGCTTTGCGCGTCTTAGCCGGCCTACGGCTCACGGGCGAAg                         >  2:394880/1‑143 (MQ=25)                                                                                                                       cgcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCg                <  1:534373/143‑1 (MQ=255)                                                                                                                           tCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGTCGAAGTGTAGGCCGGAtg            >  1:355322/1‑142 (MQ=255)                                                                                                                                 cacgCCTACTTTTTATGACCTAAGTTTAGACCATATAAGCCTTTCACGCCCCATCCTGCATTCTTGCGCCATTCCTGATGCGACGCTTTTCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGTATAAGGCGt      <  2:245994/140‑1 (MQ=18)                                                                                                                                     ccTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCACATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAc  <  1:663396/143‑1 (MQ=255)                                                                                                                                      |                                                                                                                                              GCGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAC  >  NC_000913/377235‑377509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.