Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979268 1979278 11–776 47 [0] [0] 47 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)46 (1.330) 38/268 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCT  >  NC_000913/1979139‑1979416
                                                                                                                                            |                                                                                                                                         
gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                         <  1:637933‑M2/3‑1 (MQ=255)
 tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                        >  1:505528‑M2/140‑143 (MQ=255)
 tctttacacttatctaagatctttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                        <  2:276410‑M2/4‑1 (MQ=255)
  ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                       <  2:504110‑M2/5‑1 (MQ=255)
  ctttacacttatctaagatttggcccaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                       <  1:387520‑M2/5‑1 (MQ=255)
             tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                            <  1:433980‑M2/16‑1 (MQ=255)
             tctaagatttgtcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                            <  2:452369‑M2/16‑1 (MQ=255)
             tcgaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                            <  2:324223‑M2/16‑1 (MQ=255)
              cgaagatttttcgtgaatcgacgcggctggagtcgtcagtacacgcacgtacggcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtgttg                                                                                                                           <  2:28491‑M2/17‑1 (MQ=255)
                  gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattgtcaataatgcgtaatccacatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACttttgcttt                                                                                                                       >  2:365391‑M2/123‑143 (MQ=255)
                    tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgtgtgatgcagaacacaataaacactaaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                     >  1:248962‑M2/121‑143 (MQ=255)
                    tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                     <  2:316092‑M2/23‑1 (MQ=255)
                         cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                                                                <  1:275404‑M2/28‑1 (MQ=255)
                           taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                              >  1:567177‑M2/114‑143 (MQ=255)
                            aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGCTTTGGGTGCAttt                                                                                                             >  2:56688‑M2/113‑143 (MQ=255)
                              atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTCTTGGGTGTATTtcc                                                                                                           >  1:31147‑M2/111‑142 (MQ=255)
                                 gacgcaactgtactcgtcactacacgcacatacaacggagacaggctgcgattttcaataacgcgcgagccagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                                                        <  1:217727‑M2/36‑1 (MQ=255)
                                     caactgttcgcgtccctacacacacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                    <  1:88683‑M2/40‑1 (MQ=255)
                                      aactgcactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                   >  1:273648‑M2/103‑143 (MQ=255)
                                         tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacataacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                >  2:355393‑M2/100‑143 (MQ=255)
                                         tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaaccctcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGGCTGTATTTACATGTGTTaaaa                                                                                                >  2:381332‑M2/100‑143 (MQ=255)
                                          gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGCTTTGGGTGTATTTCAATCTGTTacaaa                                                                                               >  1:632798‑M2/99‑143 (MQ=255)
                                              tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatccgtgatgcagatcacacaaaacactcaattacttaacatacatgCAAAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                           >  2:656042‑M2/95‑143 (MQ=255)
                                                 tcactacacggacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttatttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                        <  2:84611‑M2/52‑1 (MQ=255)
                                                     tagacccacatacaacggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                    <  2:239113‑M2/56‑1 (MQ=255)
                                                         cgctcctacatcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacttaaatcTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                <  2:79880‑M2/60‑1 (MQ=255)
                                                               tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTCACATGCGCTCAGGTAAAAAGTTTTTCGCTACGCTagcaag                                                                          >  2:294896‑M2/78‑143 (MQ=255)
                                                                acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTGGTTGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCCACGCTagcaagc                                                                         >  1:125692‑M2/77‑143 (MQ=255)
                                                                acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTATTGTTTTGGGTGTATTTCAATCTGATAAAAAGTTTTTCGCTACGCTagcaagc                                                                         >  2:54001‑M2/77‑143 (MQ=255)
                                                                     ggaggggggctgcgatttttaatatgtcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                    <  2:537402‑M2/72‑1 (MQ=255)
                                                                          ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                               <  1:574780‑M2/77‑1 (MQ=255)
                                                                                           taaggcgtgatgctgatcacacaaaaccctcaattacttaccataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                              <  1:629974‑M2/94‑1 (MQ=255)
                                                                                            catgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTATGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                             <  1:538974‑M2/95‑1 (MQ=255)
                                                                                                    atgcagatcacacaaaacactcagttacgtaacgtaaaggTGTAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGGTATAATCGAAATGGGATGTTgc                                     <  2:554679‑M2/103‑1 (MQ=255)
                                                                                                       cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                  <  1:358251‑M2/106‑1 (MQ=255)
                                                                                                          atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                               <  1:173901‑M2/109‑1 (MQ=255)
                                                                                                                caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                         <  2:273648‑M2/115‑1 (MQ=255)
                                                                                                                    tcacttcattaattaacataaatgTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTGGTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAc                     <  1:374769‑M2/119‑1 (MQ=255)
                                                                                                                        tcaattgcttaacataaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAGAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAGTCGAAATGGGAGGTGGCACACAGTCAAAATAAgtcgc                 >  2:317361‑M2/21‑141 (MQ=255)
                                                                                                                        tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGGTGTTGCGCACAGTCGAAATAACTCAc                 >  1:200698‑M2/21‑143 (MQ=255)
                                                                                                                        tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                 >  1:389826‑M2/21‑143 (MQ=255)
                                                                                                                         caattacttaacataaatgTATAAGTTATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGGTAGCAAGCAAAAATGAAACAGGAATAATCGAAAAGGGATGTTGCGCACAGTCAAAATAACTCAcc                >  2:551719‑M2/20‑143 (MQ=255)
                                                                                                                         caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                <  1:296644‑M2/124‑1 (MQ=255)
                                                                                                                          aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg               >  1:499446‑M2/19‑143 (MQ=255)
                                                                                                                                ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAACTTTCTCTCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCTCACAGTCAAAATACCTCACCGTAaata         >  2:451678‑M2/13‑143 (MQ=255)
                                                                                                                                 taaaataaatgTATAAGTCATACTTTTGTTTTGCGTGTATTTCAATCTGTTAAAAAGTTTTTCGTTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa        <  1:548837‑M2/132‑1 (MQ=255)
                                                                                                                                       aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt  <  1:513040‑M2/138‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCT  >  NC_000913/1979139‑1979416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: