| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,977,596 | +C | coding (998/1032 nt) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,977,595 | 1 | . | C | 95.8% | 134.5 / ‑1.5 | 48 | coding (997/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (22/24); total (23/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC > NC_000913/2977459‑2977730 | cGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑ccgctg > 2:379138/1‑138 (MQ=255) ggctgtgcccAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGTTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGa < 2:464819/136‑1 (MQ=255) ttACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCa < 2:152553/143‑1 (MQ=255) cccAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGt > 1:22088/1‑143 (MQ=255) ccAATTGTGACGATGGCGACCCAGGGTGCCGAACCGGCTTTGGCGCTGGCGGATAATCGCCCGCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGtc < 1:855282/143‑1 (MQ=255) ccAATCGTGACGATGACGACCCAGGCTTCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCCGGCGGCAAgcc > 2:439184/1‑141 (MQ=255) aaTCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGtcat < 1:238811/143‑1 (MQ=255) tCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GGAATCACTCATGTCTTTAGTCCGACGCTGGTACGTCGTCGTTCCGTGTCCGCACC‑G‑TCCGGTGGAGGCAAGacatcg > 2:686951/1‑142 (MQ=255) gTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCCGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATg > 1:689655/1‑143 (MQ=255) ggcggcCCAGGCTGCCGTACTGGCTTTGGCGGTGGTGGATCCTAGATCTCACCCGCGACTAAACTCA‑GTCCTTAGTACGACGCTGGTACGTCGTCATCATGTGTCAACTCCTG‑A‑CTTTGCTGGCAAGTCATCATGCAACCAGc < 2:16948/143‑1 (MQ=255) ggagccgggcggcCGAACGGGGTTTGGCGCTGGCGGACAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGa < 1:607697/136‑1 (MQ=255) cGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGa < 2:373870/143‑1 (MQ=255) cAGGCTGCCGACCTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAc < 2:638866/143‑1 (MQ=255) cAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAc > 1:83320/1‑143 (MQ=255) cAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGCCTGTAGTCAGACGCTGGTACGCCGCCATTCAGTGTCAACACC‑A‑TCCGCTGGCCGCCAGGCGCCCTGCAACCAGGGCCTact > 2:752609/1‑141 (MQ=255) aGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAcc < 1:103820/143‑1 (MQ=255) ggCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCAAACTCTCACA‑CAAATCACTAATGTCTTTAGGCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑GCC‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCg > 1:243400/1‑143 (MQ=255) tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCCTCATGCAACCAGCGACTAACCGCAg > 2:670663/1‑143 (MQ=255) tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAg < 1:379138/143‑1 (MQ=255) gCCGAACTGGTTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑TAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCact < 1:89494/143‑3 (MQ=255) aaCTGGCGTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGCCAACTCC‑G‑TCCGCTGGAGGCAAGCCATCATGCAACCAGCGACTAACCGCAGTTaaa < 1:712810/143‑1 (MQ=255) aCTGGCGCTGGCGCTGGCGGATGATCGCCCTCTCCCG‑GAAATCACTAATGTCCTTAGTAAGCCACTGGTACGTTGTCATTCAGCGTCGACTAC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAg < 2:9192/143‑1 (MQ=255) gCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GCAATCACTACTGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCCTCATGCAACCAGCGACTAACCGCAGTTCAAGCAAt > 2:789357/1‑143 (MQ=255) tttGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTACCCCCAGTTAAAGCAAtcc > 2:681761/1‑141 (MQ=255) gcgcTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCCGGGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCACCAGGCAACCAGCGACTAACCGCAGTTCAAGCCATCCCAgc > 1:310983/1‑143 (MQ=255) ggCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTCGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGCAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATCCCAGCGCCAg > 2:854570/1‑143 (MQ=255) gCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCCGt > 1:466082/1‑143 (MQ=255) aTCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAAttctt < 1:450893/143‑1 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTACCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGAt > 2:117277/1‑143 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAAtt > 2:34931/1‑121 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAAtt < 1:34931/121‑1 (MQ=255) ccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGCCGTCATGCAGTGTCAACACC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATg < 1:239847/143‑1 (MQ=255) ccG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGGGGCAAGTCATCATGCAACCAGCGACTAACCGCAGGTAAAGCAATTCCAGCGCCAGTCATTCTCCGATGGCCTgg > 2:865280/1‑143 (MQ=255) ccG‑GAAATCACTAATGGCGTCAGTGCGACGCTGGTACGTCGTCATTCAGTGCCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTgg < 2:868212/143‑1 (MQ=255) cG‑GAACCCACTAATTTCTCTAGTCCGAGGCGGGTACGTCGGTATTCCGTGTCAACTCC‑G‑TCCGCTGGAGGGAAGCCATCATGCCACCCGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGc < 1:297146/143‑1 (MQ=255) cTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGCCTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATGCTGCGATGGTCTGGCGACGCCGaa > 2:661709/1‑143 (MQ=255) tttAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTCACTCTTCGATGGTCTGGCGACGGCGAATCAAcccc > 2:724220/1‑141 (MQ=255) tCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGCATCAACCGCGCCTg > 1:496143/1‑143 (MQ=255) cGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCCGAc > 1:854906/1‑143 (MQ=255) gCTGGGGCGTCGTCAGTCAGTGTTGTCTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCACCCAGCGACTAGCCGCAGTTAAAGCAATGCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCAtt < 2:363488/143‑1 (MQ=255) gTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCa > 1:797669/1‑143 (MQ=255) tACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaa < 1:633913/143‑1 (MQ=255) aCGTCGTCGTTCAGTGGCACCGCC‑G‑TCCGCGGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaaa < 1:413474/143‑1 (MQ=255) aCGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaaa < 1:314129/143‑1 (MQ=255) ttCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGCAATTCTTCGATGGTCTGGCGACGGCGACTCAACCGCGCCTGACCATGACCAAACAGAACTTc > 2:84810/1‑143 (MQ=255) cAGTGTCAACCCC‑G‑GCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTg < 1:43170/143‑1 (MQ=255) gtCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTaa < 2:83320/143‑1 (MQ=255) tCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCCATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCCAACAGAACTTCTGGTacc > 2:763980/1‑141 (MQ=255) aCTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGc < 1:334706/143‑1 (MQ=255) | CGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC > NC_000913/2977459‑2977730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |