| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258674 | 258683 | 10–776 | 48 [0] | [0] 49 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 45 (1.000) | 40/266 | 0.1 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT > NC_000913/258542‑258826 | tgttaaaaattttctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:344506‑M2/1‑1 (MQ=255) gctaaattttgccaatttggtccaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa < 2:213715‑M2/13‑1 (MQ=255) ctaaattttgccaattgggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt < 1:755871‑M2/14‑1 (MQ=255) taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgacgagcagattgatcaaaaaatttaccgcacgacgcccgtatagtcgtgaagctaAGTGCAAAGATAATc > 2:203138‑M2/129‑143 (MQ=255) aaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagagtgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg > 2:82980‑M2/128‑143 (MQ=255) aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa > 1:353644‑M2/127‑143 (MQ=255) cgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccaagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgcgaaggtaAGTGCAAAGATAATCGATTC‑tt < 1:67460‑M2/22‑1 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCg < 1:716588‑M2/27‑1 (MQ=255) cagttgcatcacaacaggagatagcaatgacgttaccgagtggacagcgggggggcacacatatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCt < 1:403891‑M2/38‑1 (MQ=255) tgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTAt < 1:839759‑M2/42‑1 (MQ=255) catcacaacgggagatagcaatgacgttaccgagtggacagccgaagagcagattgatcaaaaaatttaccgcactagtcccgtatattcgtgaaggtaATTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGc < 2:194904‑M2/44‑1 (MQ=255) atcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCg > 1:261079‑M2/99‑143 (MQ=255) ccacagcaggagatagcaatgacgtgaccgagtggacacccgaagagcagattgatcaaaaaatttactgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGt < 2:648192‑M2/46‑1 (MQ=255) aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAGCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTg < 1:557817‑M2/53‑1 (MQ=255) agagaatagaaatgacgttacctagtggacacgcgaagagcagattgatcaaaaaattttccgcactaggcccgtatattcgtgaaggtaAGTGCAACGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTg < 2:81533‑M2/53‑1 (MQ=255) atagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatcttcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGCAAcc > 1:242412‑M2/86‑143 (MQ=255) atagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 1:743623‑M2/86‑143 (MQ=255) tagcaatgacgttaccgagtggacacccgaatagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCg < 2:867590‑M2/59‑1 (MQ=255) agcaatgacgttaccgaggggacacccgaagagccgagtgatcaaaaaatttcccgcactaggcccgtatattcgtgaaggtaAGTGCAACGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 1:6406‑M2/60‑1 (MQ=255) agcaaggacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 1:807730‑M2/60‑1 (MQ=255) aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc < 1:843529‑M2/63‑1 (MQ=255) ggttaccgagtggccacccgaagagcagactgatcaaaaaattgaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGaa < 1:188855‑M2/68‑1 (MQ=255) gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAGCTCGGGACCGGCAg > 1:183785‑M2/75‑143 (MQ=255) accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGCCTGTCTGCGTCGACGTGAAACCGTCCCCGGAcgtcc > 1:728636‑M2/72‑141 (MQ=255) ccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCg < 1:578477‑M2/73‑1 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt < 2:107769‑M2/74‑1 (MQ=255) gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTc < 1:813118‑M2/80‑1 (MQ=255) cccgaagaccagctttatcaaaacatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTTCGATTGTCTGGCTGTATTCGTCAACGTGAAACCGGCACCTGAAGTGCGTGAATTCTgg < 2:210639‑M2/84‑1 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg > 1:524799‑M2/53‑143 (MQ=255) attgatcaaacaatttacctcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgg < 1:209621‑M2/96‑1 (MQ=255) atcaaaaaattttccgcactaggcccgtatattcgtaaaagtaAGTGGATGGGTGGTCGATTC‑TTTTTCGATGGTCGGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCt < 1:239880‑M2/100‑1 (MQ=255) tttcccgccctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAGCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa < 2:580197‑M2/109‑1 (MQ=255) acgaaatagccccggatgttcgtgaaggtaAGTGGAAAGACAATCGATGC‑TGGTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGGACCGGAAGAGCGTTAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGaa < 2:392385‑M2/113‑1 (MQ=255) cgcactaggcccgtatattcgtgaacgtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTCACTCCTGCGGCTGGTGGATGAAGCCGCACCCgcaggccc > 2:611497‑M2/30‑140 (MQ=255) ataggcccctatattcgtgaaggtaAGTGCAAAGCTACACGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCg < 2:710567‑M2/118‑1 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGGTGGAGCTGGAAGCGCAGGAATCCCGt > 1:469416‑M2/25‑143 (MQ=255) aggcccgtatattcgtgaaggtaAGTTCCAAGATAATAGAAGT‑GTGGCGGGTGGTCCGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt < 1:732239‑M2/120‑1 (MQ=255) ccgtgtattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc < 1:747004‑M2/124‑1 (MQ=255) ccgtatgtttgtgaaggtaAGTGCAAAGATAATCGATGC‑TTTTTCGATGGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc < 2:560454‑M2/124‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAAACGAACACGGTGTGGTTTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc > 1:639613‑M2/20‑143 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGACACCGGCACCGGACGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCt > 1:78896‑M2/18‑143 (MQ=255) tattcgtgtaggtaAGTGCAAGGATAATCGATTC‑TTTTTCGATGGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa < 2:408233‑M2/129‑1 (MQ=255) tattcgggagggtaAGTGCACAGACAATCGATTC‑TTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGTATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa < 2:75601‑M2/129‑1 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGACTGGTGGCTTGGGCTGGAAGCGAAGGAATCTCGTTTTCCTTACAg > 1:542228‑M2/14‑143 (MQ=255) tcgtgaagggaAGCGCAAAGAGAATCGATTC‑TTTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATGCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt < 1:76657‑M2/132‑1 (MQ=255) gcgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc < 1:64031‑M2/134‑1 (MQ=255) gcacgtaAGTGCAAAGCTAATCGATTC‑TTTTTCGATTGTCGGGCTGTATGCGTCAACGTGGAACCGGCACCGGACGTGCGTGAATTCTGGGGCTGGTGGACGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCa < 2:165269‑M2/136‑1 (MQ=255) gggaAGTGCAAAGATAATCGATGC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt < 1:149392‑M2/139‑1 (MQ=255) aGTGCAAAGATAATCGATTC‑TGTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt < 1:740281/143‑1 (MQ=255) | GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT > NC_000913/258542‑258826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |