New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	732888 =	34 (0.710)	4 (0.090)	4/274	6.7	10.5%	coding (3306/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	734728 =	35 (0.750)					pseudogene (596/1521 nt)	rhsO	pseudogene, Rhs family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACA  >  NC_000913/734586‑734865                                                                                                                                               |                                                                                                                                           cAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGCGGTGTTccc                                                                                                                                            >  1:410148/1‑143 (MQ=17)  aGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg                                                                                                                                           >  1:294682/1‑143 (MQ=32)      gATTTATCAGCCGGGGAGCTACACGACACTCATCAGGGTTGAAACCGCCACCGGTGAGCTAGCGAAAACGACGCGCAGCAGCCTGGCGGATACCCTCCAGCAGTCCGGCGGCGAAGACGGTGGCAGTCTGCTGTTCCCGCCgg                                                                                                                                       >  2:566456/1‑143 (MQ=11)                ccGGGGAGCTTCACGCCACTCATCAGGGGTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGCACACGGCGGCAGGGTGGTGTTCCCGCCGGCGCCGGTGCa                                                                                                                             >  2:833046/1‑143 (MQ=11)                           cACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCCAAGACGGTGGCAGAGCGGTGGTCCCGCCGGCGCTGGCGCAGATGCTC‑GAcc                                                                                                                 >  2:486691/1‑143 (MQ=11)                              gCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGAGGCTC‑GACCGGc                                                                                                              >  2:496830/1‑143 (MQ=17)                                    catcaGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGaaa                                                                                                        <  1:506832/143‑1 (MQ=32)                                     atcaGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGaaac                                                                                                       >  2:18678/1‑142 (MQ=17)                                     atcaGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGGAAg                                                                                                       >  1:462330/1‑143 (MQ=17)                                          ggTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGCGaaa                                                                                                  >  2:73639/1‑143 (MQ=17)                                           gTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGCTGCTC‑GACAGGCTGGAAAGTGAAAt                                                                                                 >  1:301012/1‑143 (MQ=17)                                           gTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGGGAAAt                                                                                                 >  1:453583/1‑143 (MQ=17)                                            ttGAAACCGCCACCGGTGAGCTGGGGAAACCTCAGCGCCGGTGCCCGACTGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATc                                                                                                <  1:401241/143‑1 (MQ=11)                                            ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGAAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCAGCCGGGGGGGGTGCAGATGCTC‑GACCGGCTGGAAAGTGaaagc                                                                                                >  1:445326/1‑141 (MQ=11)                                                   cGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTGCCGCCGGTGCTGGTGGAGATGCTC‑GACCGACTGGAAAGTGAACTCCGGGCTg                                                                                         >  2:438599/1‑143 (MQ=11)                                                   cGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTg                                                                                         >  1:84852/1‑143 (MQ=32)                                                            tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtga                                                                                <  1:416999/143‑1 (MQ=32)                                                                 tGGCGACAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGtgagtgag                                                                           <  1:574295/143‑1 (MQ=17)                                                                 tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACAGGCTGGAAAGTGAAGTCCTGGCTGAGCGGGtgagtgag                                                                           >  1:128979/1‑143 (MQ=12)                                                                             aGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGCTAGGCcgccgc                                                               >  1:543691/1‑143 (MQ=12)                                                                              gcgcCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgct                                                              >  2:172555/1‑143 (MQ=32)                                                                                           gCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGGGCAGATGCTC‑GACCGGCGGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCCGGCTGGCATCGTg                                                 >  2:540667/1‑143 (MQ=255)                                                                                              gATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                              <  2:21241/143‑1 (MQ=32)                                                                                                     ttCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGGCTGACg                                       >  2:881217/1‑143 (MQ=11)                                                                                                           acaccGGCGGCGAAGACGGCGGCGGGGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAg                                 <  1:362128/140‑1 (MQ=255)                                                                                                             tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCa                               <  2:462330/143‑1 (MQ=32)                                                                                                                 gcggcgAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGCGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCCGacg                           >  2:483272/1‑141 (MQ=12)                                                                                                                     cgAAGACGGTGGCAGTGTCGTGTTCCCGCCGGTCCTCGTCCACA‑GCGCTGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCaaa                       <  1:197188/143‑1 (MQ=11)                                                                                                                                 gatcgtggtgTCCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGAcc           <  1:317444/139‑1 (MQ=17)                                                                                                                                 cAGTGTGGTGTTCGCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGAcc           <  1:762001/143‑1 (MQ=17)                                                                                                                                  aGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGAGTGACGGTGGAGCAGATGCAAAACCAGATGGAccc          >  1:682000/1‑143 (MQ=17)                                                                                                                                     gtggtgTTACCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgt       <  1:14718/143‑1 (MQ=17)                                                                                                                                      tggtgTTCCCGCCGGGGCTGGTGCAGATGCTC‑CACCCGCTGTAAAGAGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtg      <  1:160159/143‑1 (MQ=11)                                                                                                                                        gtgtTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCAGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTa    >  1:736652/1‑143 (MQ=17)                                                                                                                                          gtTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTaca  >  1:799059/1‑143 (MQ=32)                                                                                                                                               |                                                                                                                                           CAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTC‑GACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACA  >  NC_000913/734586‑734865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.