New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1396634	NA (NA)	4 (0.090)	4/268	6.6	10.5%	noncoding (591/1195 nt)	IS5	repeat region
	?	NC_000913	1428170 =	36 (0.750)					noncoding (625/1196 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAA  >  NC_000913/1428030‑1428307                                                                                                                                             |                                                                                                                                           ccAGCTCGTCGTGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTg                                                                                                                                          <  1:266761/143‑1 (MQ=21)        ctcGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGGGACCAGGCTGTGGGACAGGCCACGCCTGGCAGCgc                                                                                                                                   >  2:437567/1‑142 (MQ=11)         tcGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ac                                                                                                                                 <  1:470361/143‑1 (MQ=35)               tgtgGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAAt                                                                                                                           <  2:821056/143‑1 (MQ=34)               tctgGCGCTCCTTGGTAGCCGGCCTCGGCTGAGACAAATGGCTCCTCTCCATGAAGCAGATTACCCAGCTGAGTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAAt                                                                                                                           <  2:528643/141‑1 (MQ=255)                 tgGCGCTCCTGGGTAGCCGCCCTCGGCGGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAAtgt                                                                                                                         <  1:252150/143‑1 (MQ=255)                   gcgcTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCGATGTgg                                                                                                                       >  2:596801/1‑143 (MQ=25)                    cgcTGCTTGGTAGCCGGCCTCGGGTGGGTCTACTGGGTCATCTCCATGGCGATGATTCCTGGGCTGATTGGGGTGATGCTCGTTGGCCGCGGTGGTGGTCCGGCGGTTGGTCTTGCCACTCTTGGCATCG‑ACACCAATGTggg                                                                                                                      <  2:668268/143‑1 (MQ=2)                    cgcTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCCATGTggg                                                                                                                      >  1:559842/1‑143 (MQ=21)                       cccTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGACACTCTTGGCATGG‑GCACCCATGTGGGCCt                                                                                                                   >  2:480348/2‑143 (MQ=255)                                gCCGGCATCGGCTGAGACAAATTGCCCCTCTCCATGAAGCAGATGACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCaa                                                                                                          <  1:547683/143‑1 (MQ=17)                                  cGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCCGTGGGGCGGGCCGCTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGccgcag                                                                                                        >  2:403697/1‑139 (MQ=11)                                    gCATCGGCTAAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTg                                                                                                      <  1:550144/143‑1 (MQ=17)                                     cATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGc                                                                                                     <  1:55916/143‑1 (MQ=32)                                       tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTTGCCTTCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                   <  1:817200/143‑1 (MQ=255)                                       tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                   >  1:387966/1‑143 (MQ=32)                                         ggCTGAGACAAATTGCTCCTCTCAATCAAGCCGCTGACCCAGCTGATTGAGGTCATGCTCGCTGGCCGCGGTGGTGACCAGGCTGTGGGGCAGGCAACTCTTGGCATCG‑ACACCAATGTGGGCCTTCAGGCCAAAGTGCCAcc                                                                                                 >  2:722067/1‑142 (MQ=11)                                           cTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGa                                                                                               <  1:155231/143‑1 (MQ=32)                                                      tGCTCCTCTCCAGGAGGCAGATTAGCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCtt                                                                                    <  2:577369/143‑1 (MQ=12)                                                       gCTCCTCTCCATGAAGCAGATAACCCGTTTGATTGTGGTATTGCTCTGACCCCGCGGTGGTGACCAGGCAGTCGGTCAGTTCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTg                                                                                   <  1:400323/143‑1 (MQ=11)                                                           ctctCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGAACAGGATGTTGTGCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCCTCATGCCAAAGTGCCTCTGATTGACTTTCTAGGtat                                                                               >  1:124743/1‑141 (MQ=11)                                                               ccATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATg                                                                           <  1:643498/143‑1 (MQ=32)                                                                  tGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGCCCACGCACGGCATCGCAGAGCACTG‑ATGCCACCATGCCAAAGTGCCACTGATAGCCTTTCTTGGTCTGATGCAt                                                                        >  2:623268/1‑143 (MQ=11)                                                                                                       gcgCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTagag                                   <  1:617073/141‑1 (MQ=17)                                                                                                           cgcgGTGGTGACCAGTCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                               <  2:41881/143‑1 (MQ=17)                                                                                                           cgcgGTGGTGACCAGGCTGTGGGTCAGGCCACTTTTTGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                               <  1:743477/143‑1 (MQ=17)                                                                                                             tggtgttGTCCAGGTTGTCTGTCTGGTCACTCTTGTCTTCC‑ACTTCATTGTGTGCCTTCATGCCAAAGTGTGACTGTTCGCCTTTCTTTGTCTCTTGCATCTCCTGATCGCTTTGCTGCTTTTTGTTCTTGGTAGAGCTgtgt                             <  2:82025/142‑1 (MQ=255)                                                                                                             cgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGt                             <  1:55604/143‑1 (MQ=32)                                                                                                               gtggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGc                           <  1:696017/143‑1 (MQ=32)                                                                                                                       cAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCTatgc                   >  1:757806/1‑142 (MQ=17)                                                                                                                            tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg              <  1:623268/143‑1 (MQ=32)                                                                                                                            tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg              >  2:638213/1‑143 (MQ=32)                                                                                                                                    aGGGCACTCTGGGCGTCG‑ACACCAGTGTGGGCCTTCAGGCCAAAAGGAGACTTATTGCCTTTCTTGGTCGGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac      <  1:240089/143‑1 (MQ=11)                                                                                                                                    aGGCCGCTCTTGGCTTCG‑GCAGCTATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTGTCTTGGTCTGCTGCTGCTCCGGCTCGCGTTGCTGCTCGTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac      <  2:846894/143‑1 (MQ=11)                                                                                                                                       ccACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGGCTCGATGATGGTGGCATCCACCaa   >  1:764901/1‑143 (MQ=21)                                                                                                                                        cACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGGTTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGACGGTGGCATCCACCaag  >  1:524865/1‑142 (MQ=21)                                                                                                                                             |                                                                                                                                           CCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAA  >  NC_000913/1428030‑1428307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.