| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1939099 = | NA (NA) | 3 (0.070) | 3/266 | 7.2 | NA | noncoding (1/30 nt) | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1939129 = | NA (NA) | intergenic (+38/+93) | pykA/lpxM | pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCC > NC_000913/1938988‑1939270 | atgaaGGTTGCTTGATGTCGGGTGGCCTGGTGATTGTCGCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACGAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCt < 2:367341/140‑1 (MQ=255) ggtACGTGAGGTCTGGTGGCCTGGTGATGGTGACGCGGGGGGAGGTGATGAGTGGCGTGGGTTGTAGTGATACCGCGCGGATTTTAACGGTAGAGTGAGTACGTTGCCGGATGCGGCGAGAACGCCACTTCCGGCCTACAGtt < 2:841251/141‑1 (MQ=255) accggATGTCGAGTGACCGGGCGATGGCCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGACCACGCCACATCCGGCCTACAGTTCaa < 1:134600/139‑1 (MQ=255) aCTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACTCTTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCaa < 1:81592/143‑1 (MQ=255) cTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATTAGTACCGTGGCTTCTACTAATACCACGCGTATTTTAACTGTCGAGTAAGTACGTTGCCGTATGCGGCGAAAACGCAACATCCGGCCTACAATTCAAt > 1:72789/1‑143 (MQ=255) tGTCTGGTGACCTGGTGATTGTCACCCAGAGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAACGAtcg > 2:236034/1‑141 (MQ=255) ggTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCaa < 1:629050/143‑1 (MQ=255) ggTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACAACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCaa < 1:53164/143‑1 (MQ=255) tGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTGCATTAACGTTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATCGTTCACCa > 1:553718/1‑143 (MQ=255) ccTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAGTGATAGTTCAACAGAt > 2:324334/1‑143 (MQ=255) tGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCCACAGAttt > 1:847409/1‑143 (MQ=255) aCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTg < 2:588622/143‑1 (MQ=255) aCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTAAACAGAGTTCGAATATTcgg > 2:228769/1‑141 (MQ=255) aGGGCGACGTGATGAGTACCGTGGGTTCTAATAAAATAGAGCGTATGTTAACGGTAGAGTAAGTACATTGCATATGGCTCAGAAAAGCCCTCGGCCTGGCTGCAGTTGAAGGATAGTGCAACAGAGTTCGGATATTCTGAAgg > 2:16131/1‑142 (MQ=255) gCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCaaa < 1:589450/143‑1 (MQ=255) atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCAGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGCAGCAAACTTG‑AACt > 1:178539/1‑143 (MQ=255) gTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAATACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACTGATTTCGAATATTCTGAAGCAAACTTG‑AACTTatc < 1:810410/143‑1 (MQ=255) tACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTatca > 1:577173/1‑143 (MQ=255) ccGTGCGTACTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACTTCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTatcatc < 1:124645/143‑1 (MQ=255) gTGGGTTCTACTAATTCCACGGGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACAGCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAg < 2:256645/143‑1 (MQ=255) gTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAg < 2:685281/143‑1 (MQ=255) gTGGGTTCTACTAATACCACGCGTAATTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACCTG‑AACTTATCAACAg > 2:172729/1‑143 (MQ=255) tGGGTTCTACTAACACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAgg < 1:479098/143‑1 (MQ=255) ggTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCg > 1:421056/1‑143 (MQ=255) aTACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCtctc > 1:762478/1‑143 (MQ=255) aCCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTctcct < 1:785841/143‑1 (MQ=255) gTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCCACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCgaga > 1:495464/1‑143 (MQ=255) tATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCACTGATAGTTCAACAGTTGTCGACTCCGCGGAATCAAACCTG‑AACTTATCATCAGGCGGAGGCCTCTCTGCGCGggag > 1:599851/1‑143 (MQ=255) ttttAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCCAGAAGc > 2:534935/1‑143 (MQ=255) aaCGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCTGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCtttt > 1:268335/1‑143 (MQ=255) ggTAGAGTAAGTACGTTGCCGGATGCAGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCAAACGCCTCTCCTCGCGAGAGGCCTTTTTa > 2:226200/1‑143 (MQ=255) gTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGACGCCAACTTG‑AACTTATCATCAGGCGAAGGCCTATAATCGAGAGAGGCATTTTTAt > 1:213650/1‑143 (MQ=255) tatagtaagtgCGTTGCCGGATGCGGCGAAATCGTCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCTAATATTCTGAAGCAATCTTG‑AACTTTTTCTCAGGCGATGGCCCCTCCTCGCTATATGCGTTTTTAtt < 2:628705/140‑1 (MQ=255) tAGCGTCAGTACGTTGGCGTATGCGGCGAAAGCGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAtt < 2:669857/143‑1 (MQ=255) tAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAtt < 1:613155/143‑1 (MQ=255) taagtaCGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATg > 2:774713/1‑143 (MQ=255) ccGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATc > 2:837976/1‑143 (MQ=255) gATGGGGCGAAAACGCCACTTGCGGCCTACAGGTCATTGATAGTTCAACAGAGTTCGAATGGTCTGAAGCAAGCGTG‑AACTTATCAGCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCttt < 2:33556/143‑1 (MQ=255) gcgAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCtt > 1:423214/1‑143 (MQ=255) gcgAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCtt < 1:872233/143‑1 (MQ=255) cgAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCCTTTTTATTTGATGGGATACAGCTCTTTGCGCTta > 2:295585/1‑143 (MQ=255) aaCGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCACCTCGCGAGAGGCTTTCTTATTTGATGGGAAAAAGACCCTTGCCCGTATACg > 2:223303/1‑143 (MQ=255) aCGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATCCgg > 2:792151/1‑143 (MQ=255) ccGGCCTACATTTCAATTATAGTTCAGCAGATTTCGCATATTCTGACG‑AAACAAGTGCCTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAATATCTTTGCGCTTATACGGCTGGATTTc < 2:100431/143‑1 (MQ=255) acTACAGTTCAATGTTAGTTCCACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGccc < 2:461956/142‑1 (MQ=255) | ATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTG‑AACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCC > NC_000913/1938988‑1939270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |