| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,326,148 | G→A | 6.5% | intergenic (‑407/+251) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,326,148 | 0 | G | A | 6.5% | 146.1 / 2.3 | 60 | intergenic (‑407/+251) | yjdN/yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Reads supporting (aligned to +/- strand): ref base G (29/24); new base A (2/2); total (34/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCG > NC_000913/4325870‑4326436 | acgtgtCCGGCGTTCGGAGGGTGCGGGAATGTGTAGGCCTGGTAAGAGGCGCAAGCGTCGCATCAGGCAGTCGGGACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGAt < 2:756154/283‑1 (MQ=255) ttgtctgtgcgaCGGGGGGGGCGGGAAGTTGTGTGCCGGAAAAGACGCGCAAGCTGCGGGTCAGGCTGTCGGAACGCTTGCCGGATGCGGCGTAAACGCCTCATCCGGACTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGGGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATgcg < 2:802499/278‑1 (MQ=11) gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCCTCAGGCAGTTGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTAt > 2:203203/1‑286 (MQ=25) gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTAt < 1:203203/286‑1 (MQ=25) cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCCGGCAGTTGGCACT‑TGTGCCGGATGCAGCGGTAACGCCTTACCCGGc > 2:875005/1‑288 (MQ=255) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATACGACGCGCAAGCAGCCCATCAGGGAGTTTGCAAT‑GTTGCCGGATTGTGCGGAAACGCCCTaacggcgct > 1:772742/1‑281 (MQ=11) tttGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGGCGCCTCAGGCAGCTTGCACT‑TTTTCCGGCTGCGGCGTCAACGCCGTATCCGGCCTCCggc > 2:430435/1‑288 (MQ=11) tgtGTAGGCCGGAGAAGAGGAGGAAGCGTGGCATCAGGCGGTAGGCACCATTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATGTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 2:701122/287‑1 (MQ=11) tGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa < 1:528477/289‑1 (MQ=38) agaaaacaCGCGCAAGCGGCGTACGAGGGAGTGGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGAATCAGGCGGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGTGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa < 2:727482/282‑1 (MQ=11) gATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa > 1:74779/1‑289 (MQ=38) gACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACCCCTTATCCGGCCTACGGACGGTGCGGGAATTTTTAGGCCTGCTAAAACCCCCACGCGTCGCATCCGGACGTTCCCCCTCTTTCCCGGAT‑CAGCCTAAACGCCTTACACCGCCCACGGCGGGTGcacgcacatgt > 2:510178/1‑279 (MQ=11) gcaagcggcggcgaaGGCAGTGGGGGCAATTGCCGTATGCGGCGGAAACGCCGTATCCGGGCTACGGAGGGTGCGGGAATTGGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 2:94496/274‑1 (MQ=11) cAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGGGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCAATTTTAGGcc > 1:727482/1‑288 (MQ=255) aCCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCACGCAGTTGGCACT‑GTTGCCGGCAGCGGCGTAAACGCCTTATCCGGCCTACGGCGGGTACGGGAATTTGTTGGCCTGATAAGACGCGCCAGCGTccgac > 2:320375/1‑284 (MQ=255) aTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 2:831491/288‑1 (MQ=9) cGGCCTACGGAGGGTGCGGGGATTTGTAGGCCGGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATAAGGCGtt < 2:161774/289‑2 (MQ=255) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCTGGAATTTGTCGGCCTGATAAGACGCGCAAGCCTCGCATCAGGCACTCGGCACCGTTGTCGGACGCGGCGGTACCGCCTTCTCCGGCCtcccgcgg > 2:381732/1‑282 (MQ=11) ggCCTGATAAGACGCGCAAGCGTGGCAGCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGAGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg < 2:80557/288‑1 (MQ=255) cgcgCAAGCGTGTGACCAGACCGTCGGAACGGTTGCCGGAGGGGGCGTAAACGCCGTATCCGGCCTCCGGAGGGGGGGGGAGTTTGTAGGCCGGATAAGACGCGCAAGCGGCGCATCAGTCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCGTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa < 2:727208/288‑1 (MQ=11) aCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCTGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGGAGTCGGCACCGCTGCCGGGTGCGGCGTAATCGGCTTACCCGGCCTCCGGCGGGGTCGGGGATTTGTAGGGCCTATCAGATCGCG‑Caaaggcgtct > 2:297341/1‑280 (MQ=11) aCCGTGGCCGGATGGGGCGTAAACGCCTTATCCGGCCTACGGATGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTGGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATc < 2:78636/289‑1 (MQ=25) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCa > 1:809283/1‑289 (MQ=37) cGTTGCCGGGTGCGGCGAAAACGGCTTGTCCGGCTGACGGAGGGTGCGGGAATGTGTAGGCCTGAGAGGACGCGCAAGCGGAGCGTCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTAGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAg < 2:422251/289‑1 (MQ=11) cGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATccg > 1:702403/1‑287 (MQ=25) ttGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGACGCGGCGTAAACGCCTTATCCGGCCTAAGGAGGGTGCGGGAATTTGTAGGCCTGATAAGT‑CGCA‑CCAACGTcccgcctgt > 2:743854/1‑280 (MQ=255) tGCCGGATGCGGCGTAAACGCCTCATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCa > 1:227614/1‑289 (MQ=25) cggcgTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCgg > 1:261639/1‑221 (MQ=35) cggcgTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 2:261639/221‑1 (MQ=35) cgTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCACGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCGGGTGCGGGCATTTGTCGGCCTGATAAGA‑CGCGACACGC‑CCGCCTCAGGCATCTGGCACCGtt > 2:715962/1‑289 (MQ=14) cGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGa < 2:809283/289‑1 (MQ=39) aTCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATgcggc > 1:536850/1‑289 (MQ=17) gCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCg > 1:189373/1‑251 (MQ=35) gCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGa > 1:550154/1‑288 (MQ=40) gCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTGGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCg < 2:189373/251‑1 (MQ=21) ccTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCCGTCGGCACCTGTGCCGGAAGCGGCGTAAACGGCTTATCCGGACTACGGGGGGGGCGGGTATTTGTTGGCCTGATAAGA‑CGGC‑CCAGAGTCGCACACGGCACTTGGACCCGTTGCCGGATgggcatgcag > 2:310307/1‑279 (MQ=11) tGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTAt < 1:221680/288‑1 (MQ=255) gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCg > 1:711940/1‑289 (MQ=255) ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc < 1:726227/186‑1 (MQ=35) ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 2:726227/1‑186 (MQ=35) gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTa > 1:879729/1‑288 (MQ=255) aaTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCCGATAAGA‑AGCG‑CCAGCGGCGCAACAGGCATCTGGCACCGTTTCCGGATCCGGCG‑CGGAGGCCTTCTCCCGCtctc > 2:2543/1‑285 (MQ=14) aTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTAcc < 1:313819/288‑1 (MQ=255) aTTTGTAGGCCGGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTAcc < 1:2543/288‑1 (MQ=255) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 2:621519/207‑1 (MQ=35) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc > 1:621519/1‑207 (MQ=35) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCCCATTAGGCATCACGCCCCGTTGTCGGATGCTGCG‑CGAGCGCGTTATCCgccctcctcat > 2:774046/1‑278 (MQ=14) gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg < 1:676312/80‑1 (MQ=39) gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCg < 1:659506/89‑1 (MQ=38) cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCGATCacaatac > 1:709474/1‑289 (MQ=255) aTAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATgc < 1:53252/149‑1 (MQ=37) aTAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGCGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCGATCacaatacca > 2:790943/1‑286 (MQ=255) aTAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCT‑CGAGCGCCTTGTCCGGCTTCCCGATCacattacaa > 2:135899/1‑288 (MQ=255) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGc > 1:27266/1‑270 (MQ=21) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGc < 2:27266/270‑1 (MQ=21) aCGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCACCCGGCATCTGGCACCGTTGCCTGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCCCTCcaaatacaacaagt > 2:532733/1‑283 (MQ=14) cAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAcca < 1:554588/128‑2 (MQ=18) cAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCtttt > 1:20662/1‑289 (MQ=255) tGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGGACCGTTGCCGGATGCGGCG‑CGAGCGCCGTATCCGGCTTACCGAACACAATACAATCAGTTCTTTTTCACCAACTCAGATTTCAGt > 1:502423/1‑289 (MQ=255) gCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTCACGGATGCGGCGCCGAG‑GCCTTCTCCGGCCTACGCATCACAATACTAACCGTCTTTTTTCCCAACATCAGGTTTCCGttt > 2:818795/1‑289 (MQ=11) gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGTCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGCCCTCACGATCACAATACAATCAGTTCTTTTTCAAAAACTCAGCTTTCAGTTTCATCg > 1:1376/1‑289 (MQ=255) | CCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA‑CGCG‑CAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCG‑CGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCG > NC_000913/4325870‑4326436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |