| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,368 | Δ5 bp | coding (227‑231/690 nt) | phoB → | response regulator in two‑component regulatory system with PhoR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417368 | 417372 | 5 | 15 [0] | [0] 14 | phoB | response regulator in two‑component regulatory system with PhoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417367 | 0 (0.000) | 14 (0.700) | 13/284 | 0.5 | 100% | coding (226/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417373 = | 0 (0.000) | coding (232/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||
GCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCC > NC_000913/417225‑417505 | gCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCCGGCGGCTCCGGTCTCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCggg > 2:231673/1‑143 (MQ=255) ttgaaGCGGAAGATTATGATAGTGCTGTGAATCTAATGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATAAAACACCTCAAGCGCGAGTCGATGACCCGGGccagt < 1:386612‑M1/141‑6 (MQ=255) tCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGATTGTATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagt < 1:206034‑M1/143‑6 (MQ=255) gATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGACGATGACCCGGGccaggggtgaggttga > 2:371775‑M1/1‑127 (MQ=255) ctacgacagTGCTGTGAATCAACTGAAGGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGTCCCGGGccagtggtgatgttgacc < 2:336116‑M1/139‑19 (MQ=255) gACAGTGCTGTGATTCAACTAAATGATCCCTGGTCTGTTTTAATTTTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgcca < 1:246827‑M1/143‑23 (MQ=255) aGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCTTTTTTATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagag < 1:20733‑M1/143‑26 (MQ=255) cTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAATCACCTCCACCGCCAGCCGATGACCCCGGcccgtggcgatgttgaccgcaagagcgaaagaagaggatc > 1:69735‑M1/1‑103 (MQ=255) cccTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACATCAAGCGCGAGGCGAGGACCAGGGcccgcggagacggtgaccgtcagaggggaagaagaagatcgcgtgcgcg < 1:259345‑M1/143‑50 (MQ=255) aTTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATGAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaac < 1:386291‑M1/143‑60 (MQ=255) attgttcctcggctgTGTGTTACCGGGCGTCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaacaagaagatcgcgtgcgcggccttgaaaccggc < 2:45408‑M1/138‑64 (MQ=255) gTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagcgggtaagaagaagatcgagtgcgcgaaattaaaaaaggagcggatgactatatcaccaagccgttttcgccgaaggagctg > 1:89925‑M1/1‑38 (MQ=255) ttCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctgg > 2:296856‑M1/1‑37 (MQ=255) aTGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactttatcaccaagacgaattcgacaaaggagaaggtggcgagaaacaaagaggtaatgaacc > 1:132105‑M1/1‑10 (MQ=255) ccGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccggaggagctggtggcgcgaatcaaagcggtaatacgccgaatt > 1:99026‑M1/1‑5 (MQ=255) | GCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCC > NC_000913/417225‑417505 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |