New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	3 (0.150)	12 (0.680)	11/252	0.5	80.9%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	3 (0.170)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209471‑1209740                                                                                                                                    |                                                                                                                                           ttatgtGTCGGATTAGCCTTTGCCAGTTCCGGTTATTCTTTAGCTGTTTATGTGCCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa                                                                                                                                 >  1:115966‑M2/1‑132 (MQ=255)        tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                          >  1:261214/1‑143 (MQ=255)        tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACg                                                                                                                          >  1:339505/1‑143 (MQ=255)                   tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc                                                                                                               >  1:85245‑M2/1‑114 (MQ=255)                      gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGccttctcccgaaccaaggttttcgagagacga                                                                                                            <  2:209185‑M2/143‑33 (MQ=255)                         aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCAAGGAAACGGGACAAAAACAGGTAATGCAGAGccttctcccaaaacaaggttttcgagagccgtttg                                                                                                         <  1:17620‑M2/143‑36 (MQ=255)                                               aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTAAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccgtatgcagagcgccatccgatgtgata                                                                                   <  2:258163‑M2/143‑58 (MQ=255)                                                                        ccacccTGTTTGCGTAGTGTCTGAAGGCCACGGAATCTGGACATCATCAGGTAATTCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctta                                                          >  1:21855‑M2/1‑61 (MQ=255)                                                                              tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattcgccatcgccaatcggattcttgcggcttaacagca                                                    >  2:335348‑M2/1‑55 (MQ=255)                                                                                     gggatGGCTGAGGGGTACGGAGCCGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTGCGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCTGGGGGATTTAACATGCTTATTGGCt                                             <  2:91828/139‑1 (MQ=255)                                                                                                                  acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgtgagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggattaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgac                <  1:7572‑M2/143‑125 (MQ=255)                                                                                                                   ccAACTGGTACTGCATAGccttctcccacaccaaggttttcgagagccgtttgcacagtgccatccgatttggtatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc               >  2:96110‑M2/1‑18 (MQ=255)                                                                                                                           tAATGCAGGCccttctgccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca       >  2:17620‑M2/1‑10 (MQ=255)                                                                                                                               gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtccggtaagtaactggtcgtgccgccccctctacagcct   <  2:345562‑M2/143‑138 (MQ=255)                                                                                                                               gCAGAGccttctaccaaaacacagatagcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagtgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggcc   <  2:228294‑M2/143‑138 (MQ=255)                                                                                                                                cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg  <  2:379460‑M2/143‑139 (MQ=255)                                                                                                                                    |                                                                                                                                           TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209471‑1209740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.